Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02829 ATGGCTCATTTTCATTTGAGACAAAAACTACTCTTCCCATTTCTACTAATCCTTTCCTTAACAACATTTGTTTCTTCACATAGCAGGCCCTATTCAACTCCAAGTGTCACACACTTAACTGATTCATTTCCTCATGTACTAATAGAAAGTGCTTTTTCTAATGCTTTTGGAGCCTCACATGTTAAGTTTCTTAGTAATGGGTCCATGGCCACTTTGGCTCTTGACAAAATCTCAGGCTCTGGCTTGGTCTCTCAAAATAGATACTCCTATGGTTTCTTTAGTGCTGCAATCAAATTACCTGCTGGTTTGTCACCTGGAGTTGTAGTTGCTTTTTATTTGTCAAATGCAGATAAATTCCCTCACAGCCATGATGAGATAGATATTGAACTGCTTGGTCATGACAAAAGAAATGATTGGGTGATTCAAACAAACCTGTATGCCAATGGAAGTGTCAGCACaggaagagaagagaaattCTATCTCTGGTTTGATCCAACACAGCAGCACCATTATTATAGCATCTTGTGGAACAGCTATCACACTGTgttttttgttgacaatattCCAGTGAGGGAATTCATACACAAAAACtcatatccatttatttatccatcaaaACCAATGTCATTATATGCAACAATATGGGATGGTTCAGAATGGGCTACACATGGAGGAAAATACCCTGTTAACTATAAATATGGACCATTTGTTGTTTCATTAACTGAAATGGAATTGAGTGGTTGCATAGCTGATCCAAAAGTACCAACTTCTTCTTCATGTTCTAATTCAAATCCTTCAGGATTAGACCCTGCTAATGGATCAGAGTTTACTAAGCTTTCACAGCAACAAATAGCAGCTATGGATTGGGctagaagaaaactcatgttttATTCTTATTGTAATGATAGACCTAGATACAAAGTTATGCCACCAGAATGTCACTAA 945 0.3481 MAHFHLRQKLLFPFLLILSLTTFVSSHSRPYSTPSVTHLTDSFPHVLIESAFSNAFGASHVKFLSNGSMATLALDKISGSGLVSQNRYSYGFFSAAIKLPAGLSPGVVVAFYLSNADKFPHSHDEIDIELLGHDKRNDWVIQTNLYANGSVSTGREEKFYLWFDPTQQHHYYSILWNSYHTVFFVDNIPVREFIHKNSYPFIYPSKPMSLYATIWDGSEWATHGGKYPVNYKYGPFVVSLTEMELSGCIADPKVPTSSSCSNSNPSGLDPANGSEFTKLSQQQIAAMDWARRKLMFYSYCNDRPRYKVMPPECH 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02829 314 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 277 313 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Tsu04g02829 314 SUPERFAMILY Concanavalin A-like lectins/glucanases 52 313 IPR013320 -
Tsu04g02829 314 Gene3D - 32 313 - -
Tsu04g02829 314 Pfam Glycosyl hydrolases family 16 51 232 IPR000757 GO:0004553|GO:0005975
Tsu04g02829 314 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 24 240 IPR000757 GO:0004553|GO:0005975
Tsu04g02829 314 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 4 314 IPR044791 GO:0004553
Tsu04g02829 314 PIRSF EndGlu_transf 11 314 IPR016455 GO:0010411|GO:0016762|GO:0042546
Tsu04g02829 314 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 33-RELATED 4 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02829 Tsu-Chr4 33497499 33499916 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02829 9 314 Glycoside Hydrolase AT1G10550 62.058 4.50e-145 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02829 K08235 - gmx:100778993 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02829 04 33497499 33499916 Tsu04g02829 04 33497499 33499916 ECH