Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02823 ATGGCTACAGCAGAGAGTCTTGTGGAATCCACCATGAACAAGGACCCAAATGCTAATGGTGTTTCATCTGTCATTCCTGGCTGGTTTTCTGAAATTAGCCCAATGTGGCCtgGAGAAGCTCACTCCTTGAAGATAGAAAAGATTTTGTTTCAAGGAACGTCTGACTACCAGAAAGTCATGGTCTTCCAGTCATCAACGTATGGCAAGGTTCTTGTTTTGGATGGTGTTATTCAGCTCACAGAAAGGGACGAATGTGCCTACCAAGAAATGATCACTCATCTTCCTCTTTGCTCTATACCAAACCCTAAAAAGGTTTTGGTTATTGGTGGAGGTGATGGAGGAGTCCTGCGGGAAGTGGCACGTCATTCTTCAATTGAAAAGATAGACATTTGTGAAATTGACAATATGGTTGTTGAAGTCTCCAAACAATTTTTCCCTGAAGTTGCAGTAGGGTTTAATGATCCACGTGTGACACTTCGCATTGGTGATGGAGTTGCATTTTTGAAGGCAGCTCCAGAAGGAACTTATGATGCAGTTATAGTGGATTCATCTGACCCTATCGGTCCTGCTCAAGAGCTTTTTGAAAAGCCCTTCTTTCAGTCAGTGGCTAGGGCTCTTCGTCCTGGAGGAGTTATGTGCACTCAAGCAGAAAGTATATGGCTTCATATGGATATAATTGAGGACATTGTGTCCAATTGTCGTCAGATTTTTAAAGGCTCTGTCAACTATGCTTGGACTACAGTTCCTACATACCCAAGtgGGATGATTGGTTTTATGCTTTGCTCAACCGAGGGACCTCTTGTTGATTTCAAGCATCCGGTGAATCCCATAGACGAAAAAGAGAGTCAGAAGTCAGTAAGACCACTAAAATTTTACAACTCCGAGATTCATACAGCAGCTTTCTGTTTGCCGTCGTTTGCAAAAAGGAAGATTGGTTCCAAAGAAAATTGA 951 0.4238 MATAESLVESTMNKDPNANGVSSVIPGWFSEISPMWPGEAHSLKIEKILFQGTSDYQKVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVIGGGDGGVLREVARHSSIEKIDICEIDNMVVEVSKQFFPEVAVGFNDPRVTLRIGDGVAFLKAAPEGTYDAVIVDSSDPIGPAQELFEKPFFQSVARALRPGGVMCTQAESIWLHMDIIEDIVSNCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPLVDFKHPVNPIDEKESQKSVRPLKFYNSEIHTAAFCLPSFAKRKIGSKEN 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02823 316 Gene3D Vaccinia Virus protein VP39 79 316 IPR029063 -
Tsu04g02823 316 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 24 311 IPR029063 -
Tsu04g02823 316 Pfam Spermidine synthase tetramerisation domain 27 81 IPR035246 -
Tsu04g02823 316 Gene3D Spermidine synthase, tetramerisation domain 20 78 IPR037163 -
Tsu04g02823 316 Pfam Spermine/spermidine synthase domain 84 271 - -
Tsu04g02823 316 PIRSF Spermidine_synth 16 316 IPR030668 GO:0006595
Tsu04g02823 316 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 105 118 IPR030373 -
Tsu04g02823 316 PANTHER SPERMIDINE/SPERMINE SYNTHASE 11 316 IPR001045 GO:0003824
Tsu04g02823 316 TIGRFAM speE: spermidine synthase 28 306 IPR001045 GO:0003824
Tsu04g02823 316 PANTHER SPERMIDINE SYNTHASE-RELATED 11 316 - -
Tsu04g02823 316 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 26 263 IPR030374 -
Tsu04g02823 316 Hamap Polyamine aminopropyltransferase [speE]. 27 312 IPR001045 GO:0003824
Tsu04g02823 316 CDD AdoMet_MTases 104 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02823 Tsu-Chr4 33294437 33299659 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02823 K00797 - gmx:100776863 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02823 04 33294437 33299659 Tsu04g02823 04 33294437 33299659 ECH