Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02769 ATGGGTGTAATCTTTGGTTCCGAGAACAATAGATTTGTATCAATTATCAGCCAGAGATCCCTTGATTCCCCCAAGGAATCATCATCCCCCAAGGAATTATCACCCCCCAAGGAATTATCATCAATAAGCTCGCTGCAGATTAAATACATCAGTTTTCCTGAATGCACTATTGATTATCAAGATTACACTCCATGCACCGATCCAAGGAGATGGAAGAAGTACGGATCCTATCGTCTCAATATGTTGGAACGCCATTGCCCTCCAGTTTTTGAGAGGAAAGAATGCTTAGTTCCTCCCCCGGATGGATACAAGCCTCCTATTAGATGGCCAAAGAGCAGAGATGAATGTTGGTACAGGAATGTTCCATATGACTGGATTAACAAGCAGAAGTCCAACCAACATTGGTTAAAAAAGGAAGGGGAGAAATTCTTCTTTCCCGGCGGGGGTACAATGTTCCCAAATGGTGTTGGTAAATATGTTGATTTAATGGAAGATCTTATCCCAGAAATGAAAGATGGCACTATTCGAACTGCCATTGATACTGGTTGTGGGGTTGCTAGTTGGGGTGGTGACTTGCTGGATCGCGGGATACTTACCATGTCTCTTGCTCCAAGAGATAACCATCAAGCTCAGGTTCAATTCGCTTTGGAGCGTGGTATCCCTGCAATTCTTGGTGTCCTTGCTACACACAGGCTTCCATTTCCATCAAATTCCTTTGATATGGCTCATTGCTCCAGATGCCTCATTCCATGGACAGACTTCGGTGGAGTTTCTCTTCTTGAAATACACCGGATTCTTCGTCCTGGAGGATTTTGGGTTTTGTCTGGTCCACCTATCAACTACGAGCGCAGGTGGCGTGGATGGAACACAACTATCaaagaccaaaaatcaaattacGAGAAATTGCAGGACTTGCTAACTTCATTGTGCTTTAAATTGCATAATAAGAAGGGCGACATTGCCGTATGGCAGAAGTCTCCTGATAATGAATGCTATAATAAGCTGACTAAAGATACTTATCCGCCTAAATGTGACGATAGCCTCGATTCAGATTCAGCATGGTATACTCCGATTCGTACTTGTTTAGTGGTTCCGAATCCAAAATTTAAGAATTTAGGTCTGACATCAATTTCTAAGTGGCCTGAGCGGTTGCGTGTTACACCTGAACGGATTTCGAAGGTTTATCATGGGAGTGATAGTACGTTCAAACGTGACGACAATAAGTGGAAGAAGCATGTTGTGCACTACAAGAAGTTGATACCTGAGCTTGGGACTGACAAGATAAGAAACATGATGGATATGAATACCGTATATGGAGGTTTTGCTGCGGCTTTGATTGATGATCCTGTATGGGTTATGAATGTGGTCTCATCTTATGCTGCCAATACGCTCCCTGTTGTTTATGATCGAGGCCTCATTGGAACCTTCCATGACTGGTGTGAAGCATTTTCAACATATCCTCGGACATATGATCTCCTTCATCTTGCAGGACTCTTCACTGCAGAAAGCCACAGATGTGAAATGAAGTATGTGTTGCTGGAAATGGACCGAATTTTACGACCTGGTGGGTATGCTATCATACGGGAGTCCAGTTACTTTTTTGATGGCATTACAACCATTGCCAAGGGCATGCGATGGGAATGTCGTAAAGAAGACACCGAGCAGGGCGGTGACATGGAAAAGATATTAATATGCAAGAAAAAGCTATGGTATACAATTGTTTGGTTTTACAAAATACGACTTCTTCTACCTCTTGACAGAgCTTCCCCTTTTAAGCCCGGGCAAGACAGAAGCAGATACTGCGTCTatcacaaaagttacgggcatcTGACCGAAGACTGCATCCAGCTCAAGGATGCCATAGAAATTTTGATCCGTAATGGCAAGTTGAAAGACTATGTCAAGCGGAAGGAGAACCCTCGCCAGGAGAAGAAGCGCGAGGACACCCCCGAGGATGAGCCCAGAGCTTCCGGGGAGAAGAACGTCGCCTTGGTTGTCTGGCGACCAGAGGACTTCTATGTCCCCAAACACCTCAAAGACACCTACGAGTATCCCATCCTCAACGAATGGAAATTTTTTGCTGAAACCATGGTCATTTCCGGCGTCGTCTTCGACAAACACACTGTCGGCTCGGTAAAAAGAAAGTTCGAGGAGCTCATTACTGCCTCCTCGGGCATGGCTGTCACCCTCGGTAAACCGAAGACTTCGTCACAGCCCCTCTCCTTCTATCTCGAGGAGCTGCCCGGAGGATCTGCCAACTCACAGATCCCCCTCCTCGTCAGAGCCGACATGGCAAACTTTGAGGTTCGACGCATCCTCGTCGACTCGGGCAGCTCGTGCGACATTATGTACGCACATCTGTTCAGGACATTGCAGCTGGATGAGTCCCACCTCACACCGTATTTGGGCTCAGATCTCCAAGGATTCAACGGGGAAACCACAAAGCCCTGGGGTTACGTCGACCTGATCATCACCTTCGGCCACAAGGAAACGGCCAAGTCGATCAAAGTCAAGTTCCTGGTGGTAGATTGTCCATCTCTCTACCAGTGCATCATNGACCTGATCATCACCTTCGGCCACAAGGAAACGGCCAAGTCGATCAAAGTCAAGTTCCTGGTGGTAGCTACTCTCCATGGAGACATTGAGGCTGCGAGGAGGTGCTTCAATGCAGCTTATAAAGGGCAGAGCTATGTTGGCCCTGTCCCTGAAGCGAAGAAGAGCAAGACTTCTTCCGAGCAGCCAGAAACGAACACAAAGCCTCCTCCCCCACAACCTCCCCAGAAAGAGAAGAAGCTGCGCAAGGACAACACAGAGGGCGACGCGGCGAGCAGGGATAACCTTCGTCCCATTCCCGACGGAGATTTCGAGCTGATCCCCCTTGGAGAAGATCCGAGCAGGAACTTGAAGATTGGAAAGGACGTCCCCGACTTGGCGAGGAAACAGCTGGTGGCCTGCTTAAAAGACAACGCTGACCTGTTCGCCTGGAGTGCTTCCGAGATGCCAGGTTTGGACCCCAACATTGCTTGTCACCAGTTGACCGTCGACGAAGCTGCTAGTGCTGTAGTGCAACGTAGGCGTAGGCAGTCTCCTGAAAAAATGGAGGCTGCAAAAAAAGTTGTAAAAGACCTCTTAgaggcaaattttatttctgaagcCAAGGTACAATCAAATCCCAATGGATGTGGCCGACAGGACAAAAACGGCCTTCATGATCGAGTCGGGCAACTATTACTACAACGTAATGCCATTCGGCCTGAAAAACGCCGGTGCTACTTATCagcggatgatgaacaaagttttcCGAGGAGAGATcggggacatgctcgaaggaagttcctcggtttctacctcACCGAGCGCGGAATCGAGGCTAACCCCGACAAATGTCGAGCATTCACCGAGTTCCCAACTCCCAACGACAAAAAATCCATACAAACATTGAATGGAATGCAGACCGCATTATCCCGCTTCGTAGCAAAATCTGCCCAACACGCACTTCCCCTTTTCAAATTGCTTAGGAAAGAATCTGCCTTCGAGTGGACTGAGGAGTGCGAGCAGGCCCTTCAACACTTGAAGAAGGCACTGTCCGAGCCCCCAGTTCTGTCGCGCCCGGATGTCGGGGAGGTCCTATATCTCTACCTCGCTGTCGCGTCCGAGGCTGTCAGCGCCACTCTCATACGAGAAACGCTCGAAGGGCAGAAGTCAGTATACTTCACGAGCAAAGCCTTGCAATGCCCCGAGCTCAGATACCAGCGAATCGAAAAAGTCGCCCTAGCCCTCGTCACTGCGGCGAGGAGACTGCGATATTACTTCCTCGCACACACGATCGTCGTGCGAACCGACCAGCCCATCAAGTCACTTCTTGCCCGACCAGACATGGCGGGCAGGAtgctgaaatggtcgttggagctcTCCGAATTCGACATCCGCTACGAAAGCAGAAAATCACTCAAAGCCCAAGTATTGGCCGACTTCGTGGCCGAAATGACTTGCTCTCCCTCCTCGACGGAGGGAGCGAACAAGTGGACCATTTTCGTCGACGGAGCGTCCAACGCAACAGGGGCGGGCGCAGGAATCATCCTCGAAAACGAGGAGGGCATCCTGATCGAAGTTTCGCTAGCACTGTCCTTTCCGACCTCAAACAACCAGGCAGAATACGAGGTCTTCCTTGCAGGATTGCGTCTCGCCGAGGACGTGGGcgcgaaggaaataaaaatctatacagATTCGCAGCTCGTCGCATCGCAGGTCCTAGGAGAATACCAAGCCAAAAATGAGAACTTATCTGAGTACTTGGCCTTAGTGAAGGAAAGAATCACGAAGTTTGACTCCGCCGAAATACAGCATGTTCCCCGAGAGCACAACAAACGAGCAAACATCCTGTCAAAACTGGCGAGCACGAAAAGAAAGAACGGGAATAAATCCGTAATCCAGGAAATCCTCTCCCATCCGAGCATACGAAAACCAACGAGGGTCCTCGACATAAACGCCATCGGGGACGCCAATTGTTGGATGACCCCAGTGTACAACTAG 4533 0.4721 MGVIFGSENNRFVSIISQRSLDSPKESSSPKELSPPKELSSISSLQIKYISFPECTIDYQDYTPCTDPRRWKKYGSYRLNMLERHCPPVFERKECLVPPPDGYKPPIRWPKSRDECWYRNVPYDWINKQKSNQHWLKKEGEKFFFPGGGTMFPNGVGKYVDLMEDLIPEMKDGTIRTAIDTGCGVASWGGDLLDRGILTMSLAPRDNHQAQVQFALERGIPAILGVLATHRLPFPSNSFDMAHCSRCLIPWTDFGGVSLLEIHRILRPGGFWVLSGPPINYERRWRGWNTTIKDQKSNYEKLQDLLTSLCFKLHNKKGDIAVWQKSPDNECYNKLTKDTYPPKCDDSLDSDSAWYTPIRTCLVVPNPKFKNLGLTSISKWPERLRVTPERISKVYHGSDSTFKRDDNKWKKHVVHYKKLIPELGTDKIRNMMDMNTVYGGFAAALIDDPVWVMNVVSSYAANTLPVVYDRGLIGTFHDWCEAFSTYPRTYDLLHLAGLFTAESHRCEMKYVLLEMDRILRPGGYAIIRESSYFFDGITTIAKGMRWECRKEDTEQGGDMEKILICKKKLWYTIVWFYKIRLLLPLDRASPFKPGQDRSRYCVYHKSYGHLTEDCIQLKDAIEILIRNGKLKDYVKRKENPRQEKKREDTPEDEPRASGEKNVALVVWRPEDFYVPKHLKDTYEYPILNEWKFFAETMVISGVVFDKHTVGSVKRKFEELITASSGMAVTLGKPKTSSQPLSFYLEELPGGSANSQIPLLVRADMANFEVRRILVDSGSSCDIMYAHLFRTLQLDESHLTPYLGSDLQGFNGETTKPWGYVDLIITFGHKETAKSIKVKFLVVDCPSLYQCIXDLIITFGHKETAKSIKVKFLVVATLHGDIEAARRCFNAAYKGQSYVGPVPEAKKSKTSSEQPETNTKPPPPQPPQKEKKLRKDNTEGDAASRDNLRPIPDGDFELIPLGEDPSRNLKIGKDVPDLARKQLVACLKDNADLFAWSASEMPGLDPNIACHQLTVDEAASAVVQRRRRQSPEKMEAAKKVVKDLLEANFISEAKVQSNPNGCGRQDKNGLHDRVGQLLLQRNAIRPEKRRCYLSADDEQSFPRRDRGHARRKFLGFYLTERGIEANPDKCRAFTEFPTPNDKKSIQTLNGMQTALSRFVAKSAQHALPLFKLLRKESAFEWTEECEQALQHLKKALSEPPVLSRPDVGEVLYLYLAVASEAVSATLIRETLEGQKSVYFTSKALQCPELRYQRIEKVALALVTAARRLRYYFLAHTIVVRTDQPIKSLLARPDMAGRMLKWSLELSEFDIRYESRKSLKAQVLADFVAEMTCSPSSTEGANKWTIFVDGASNATGAGAGIILENEEGILIEVSLALSFPTSNNQAEYEVFLAGLRLAEDVGAKEIKIYTDSQLVASQVLGEYQAKNENLSEYLALVKERITKFDSAEIQHVPREHNKRANILSKLASTKRKNGNKSVIQEILSHPSIRKPTRVLDINAIGDANCWMTPVYN 1510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02769 1510 Pfam RNase H-like domain found in reverse transcriptase 1180 1278 IPR041577 -
Tsu04g02769 1510 MobiDBLite consensus disorder prediction 636 655 - -
Tsu04g02769 1510 MobiDBLite consensus disorder prediction 899 959 - -
Tsu04g02769 1510 CDD RNase_HI_like 1342 1466 - -
Tsu04g02769 1510 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 61 567 IPR004159 GO:0008168
Tsu04g02769 1510 Gene3D - 1127 1211 IPR043128 -
Tsu04g02769 1510 SUPERFAMILY Ribonuclease H-like 1340 1461 IPR012337 -
Tsu04g02769 1510 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 1 572 IPR004159 GO:0008168
Tsu04g02769 1510 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 95 289 IPR029063 -
Tsu04g02769 1510 ProSiteProfiles RNase H type-1 domain profile. 1338 1467 IPR002156 GO:0003676|GO:0004523
Tsu04g02769 1510 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 404 549 IPR029063 -
Tsu04g02769 1510 PANTHER PMT16, PUTATIVE-RELATED 1 572 - -
Tsu04g02769 1510 MobiDBLite consensus disorder prediction 926 951 - -
Tsu04g02769 1510 Pfam Reverse transcriptase-like 1347 1464 IPR002156 GO:0003676|GO:0004523
Tsu04g02769 1510 Gene3D - 1343 1482 IPR036397 GO:0003676
Tsu04g02769 1510 Gene3D Vaccinia Virus protein VP39 151 325 IPR029063 -
Tsu04g02769 1510 CDD retropepsin_like 771 843 - -
Tsu04g02769 1510 SUPERFAMILY DNA/RNA polymerases 1007 1316 IPR043502 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02769 Tsu-Chr4 32160043 32169990 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02769 - - gmx:100820623 1029.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02769 04 32160043 32169990 Tsu04g02769 04 32160043 32169990 ECH