Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02744 ATGGAAGCAGTATCAAAAAACCCTAGACcaacaaaaattgcaaaatacCCATCTAAATCCAAAAACCCTAATAGAAATTCATCCCCAATTCGGAAACCCAATAATCATaatcaatcaaatcaatttcCATCACATCTTGATACACCAAATGTTTCATCAACTGCTCGAACCCTTTGTAATCTTCTTACCCGAACATCCCCTCAAGATATCGATTCGGCTTTATCATCTTCAAAGATTCATCCTTCAGAAGAATGTGTTCATGAGGTTCTTAAGCTTTCTTACAATTACCCTTCTTCGGCCATTAAGTTTTTCCGGTGGGCCGGACGTTTGAGAAAACACTCGGCCCATGGGTGGAACTTGATGGTTGATTTATTGGGCCGGAATCAGCTTTTCGAGCCCATGTGGGATGCTGTTAGGACTATGAAACAGGAAGGTGTGCTGTCTTTGCCCACCTTTGTTTCGGTTTTTCAGAGTTATTGTATGGCTGGTAGAATTAATGAGGCTGTTATGAGTTTTGATGTGATGGATAGGTATGATGTTGAGAAGAATGTTGTGGCGGTTAATTCGTTGCTTAGTGCGATTTGTCGCGAAGAGAATCAAACATCAGCGGCTAGTGAGTTTTTTGAGAAGGTTAAGGGGAAGGTTGAGTTGGATGGGGATAGTTTCGCGATATTGTTGGAAGGATGGGAGAAGGAAGGTAATGCTGCTAAAGCCATGAGTACTTTTGGTGAGATGGTGATTCGTATTGGTTGGAGTCAGGATAATGTAGCGGCTTACGATGCACTTTTGATGACTCTACTTCGCGCTTTGCAGTTTAACGAGGTTGTGACGTTTCTTAAAGTTATGAAGGAACATGACTGCTATCCAGGTTTGAAATTCTTTACCAATGCTCTTGATGTTTTTGTTAAAAGGAATGATGCTGCTCATGCCATCCCGTTGTGGGATGTCATGGTTGCGAGTGGATTATTGCCTAATTTGATCATGTACAACGCCATGATTGGGTTGCTTTGCAACAATGGCGAAATTGATCATGCGTTTCGCTTGCTCGATGAGATGGTTTTCCATGGCGCTTTTCCCGACTCTTTGACGTATAACATGATTTTCGAGTGCTTGGTGAAGAACAAAAAGGTTCGTGAAACGGAGCAGTTCTTTGCCGAGATGATCAAGAACGAGTGGCTGCCGACAGCTTCTAATTGTGCGGTGGCCATCGAAATGTTGTTTAATTGTGATGACCCTGATACAGCACTTGAGATTTGGAGTTACATGGTTGACACTCATGTTGGTGCACTTGACGTGAGTGCAAATATGTTGCTCATTGGACTTTGTAAATTGAAAAGACTTTCAGAGGTGAGAAGGTTTGCTGAAGAAATGCTTGATAAAAGTATCATCATATATGAATCTACAATGACCAAGTTGAAGGAAGTGTTCTATAAGGAGAGTAGAAGTTCAAGTACAAGAGACAAATTTGATACTTTATACAGGAGGTGGAAAGCTCATGTCAAGTTGTAA 1509 0.4062 MEAVSKNPRPTKIAKYPSKSKNPNRNSSPIRKPNNHNQSNQFPSHLDTPNVSSTARTLCNLLTRTSPQDIDSALSSSKIHPSEECVHEVLKLSYNYPSSAIKFFRWAGRLRKHSAHGWNLMVDLLGRNQLFEPMWDAVRTMKQEGVLSLPTFVSVFQSYCMAGRINEAVMSFDVMDRYDVEKNVVAVNSLLSAICREENQTSAASEFFEKVKGKVELDGDSFAILLEGWEKEGNAAKAMSTFGEMVIRIGWSQDNVAAYDALLMTLLRALQFNEVVTFLKVMKEHDCYPGLKFFTNALDVFVKRNDAAHAIPLWDVMVASGLLPNLIMYNAMIGLLCNNGEIDHAFRLLDEMVFHGAFPDSLTYNMIFECLVKNKKVRETEQFFAEMIKNEWLPTASNCAVAIEMLFNCDDPDTALEIWSYMVDTHVGALDVSANMLLIGLCKLKRLSEVRRFAEEMLDKSIIIYESTMTKLKEVFYKESRSSSTRDKFDTLYRRWKAHVKL 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02744 502 Gene3D Tetratricopeptide repeat domain 72 252 IPR011990 GO:0005515
Tsu04g02744 502 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 360 394 IPR002885 -
Tsu04g02744 502 PANTHER OSJNBA0019D11.15 PROTEIN 31 499 - -
Tsu04g02744 502 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 325 359 IPR002885 -
Tsu04g02744 502 Gene3D Tetratricopeptide repeat domain 377 494 IPR011990 GO:0005515
Tsu04g02744 502 Gene3D Tetratricopeptide repeat domain 253 376 IPR011990 GO:0005515
Tsu04g02744 502 TIGRFAM PPR: pentatricopeptide repeat domain 327 360 IPR002885 -
Tsu04g02744 502 TIGRFAM PPR: pentatricopeptide repeat domain 363 395 IPR002885 -
Tsu04g02744 502 Pfam PPR repeat family 324 373 IPR002885 -
Tsu04g02744 502 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 31 499 - -
Tsu04g02744 502 MobiDBLite consensus disorder prediction 1 49 - -
Tsu04g02744 502 MobiDBLite consensus disorder prediction 17 49 - -
Tsu04g02744 502 Pfam PPR repeat 151 178 IPR002885 -
Tsu04g02744 502 Pfam PPR repeat 432 461 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02744 Tsu-Chr4 31633723 31636510 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02744 255 501 Glycosyltransferase AT1G05670 22.267 3.74e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02744 - - gmx:100796114 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02744 04 31633723 31636510 Tsu04g02744 04 31633723 31636510 ECH