LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu04g02737	ATGGGATCCCAAGGCGGGTTCGGTCAATCAAAAGAATTTCTCGACCTAATCAAATCAATCGGTGAAGCTCGATCTAAAGCTGAAGAAGATCGAATTGTAATTCGTGAAATCGAAACCCTAAAACGACGAATCTCCGAACCAGATATCCCAAAACGAAAGATGAAAGAGTACATTATTCGTCTTCTTTATGTTGAAATGCTTGGTCATGACGCTTCTTTCGGTTACATTCACGCCGTTAAAATGACACACGATGATAATCTTCTCTCAAAACGGACCGGTTATCTGGCCGTTACTCTTTTCCTTAATGATGATCATGATCTTATCATTCTCATTGTTAATACTATTCAGAAAGATCTTAAGTCTGATAATTATCTTGTCGTTTGTGCTGCACTTAATGCCGTTTGTAGACTTATCAATGAAGAGACTATACCTGCAGTTTTGCCTCTTATTGTTGAACTACTTTCTCATGGTAAAGAAGCTGTTAGAAAGAAATCGGTTATGGCTCTTCATAGCTTTTACCGTAAATCGCCTTCTTCTGTTTCGCACCTTGTGTCGAATTTTAGGAAAAGATTGTGTGATAATGATCCTGGTGTTATGGGTGCTACTCTTTGTCCTTTGTTTGATCTTATAAACGATGATCCGAATCCGTATAAGGATCTTGTTGTTAGTTTTGTTAGTATTCTTAAACAGGTAGCTGAACATAGATTGCCTAAGAGCTATGATTATCATCAGATGCCGGCTCCATTCGTTCAGATTAAGTTGCTGAAAATTTTGGCATTGTTGGGGAGTGGTGACAAACCTTCTAGCGAACACATGTATACTGTTATTGGCGATATAATTAGGAAGGGAGATTCGTCGAGTAACATAGGGAATGCTATTCTTTATGAGAGTATTCGCACTGTCTCTTCCATACATCCCAATGCCAAGTTGTTAGAAGCGGCTGCAGATGTGATTGCCAAATTTTTGaagAGTGATAGTCATAATTTGAAGTACATGGGGATTGATGCTCTTGGTCGGCTGATAAAGTTAAGTCCGCTAATTGCAGAACAACATCAACTTGCTGTCATTGACTGCTTAGAGGATCCTGATGATACTCTAAAGCGAAAAACTTTTGAACTGCTATACAAAATGACCAAGTCTTCCAATGTGGAAGTGATTGTTGACCGTATGATTGAGTACATGATCAGCATTAGTGACGATCATTATAAAACCTATATAGCTTCTCGGTGTGTGGAACTTGCTGAACAATTTGCACCAAGTAATCATTGGTTTATACAGACAATGAATAAAGTTTTTGAGCATGCTGGAGATCTTGTGAATATCAAAGTTGCACATAATTTAATGCGGTTGATTGCGGAAGGATTTGGAGAGGACGACGATGCGGCATATAGTCAGCTGAGATCGTCTGCTGTTGAGTCATATTTGCGCATTATTGGCGAGCCAAAGCTTCCATCAGTCTTTCTTCAAGTTATCTGTTGGGTTCTTGGGGAATATGGCACGGCTGACGGAAAGCATTCTGCTTCCTATATCACTGGGAAATTATGCGATATGGCAGAGGCATATTCTAATGATGAAATTGTTAAGGCATATGCGATAACAGCATTGACAAAAATTTATGCATTTGAAATAGCAGCTGGGAGGAAAGTGGATATGCTATCTGAGTGCCAATCTTTGGTTGAAGAATTATTAGCATCCCACTCCACTGATTTGCAGCAACGTGCTTATGAATTGCAAGCTGTTATTGGTTTGGATGCACGAGCTGTTGAAGCAATATTGCCACATGATGCCAGTTGCGAAGACATTGAGGTGGATAAAAATCTGTCTTTCCTCAATGGTTATATCCAGCAATCTATAGAAAGTGGTGCTATGCCCTACATTTCAGAGAATGAGCGCTCTGGAATGGTGAATATGAGCAACTTCAGAAGCCATGACCAGCAAGAATCTGGACAGCATGGTCTGAGATTTGAGGCGTATGAAGTTCCAAAGGCTCCTGTGCCATCCAAAGTTACTCCAGTTTCACTTTCATCCACAACTGACCTTGTTCCAGTACCCGAATCATTGTATGCCAGGGAGACTCACCAGGTCTCGTCAGTGGGATTAGCATCAGATACAGGATCATCGGAGCTTAAGCTAAGGCTTGATGGTGTTCAGAAGAAGTGGGGTAAGCCAACTTATTCGTCCCCAGCATCATCTTCCTCAAATTCTACTTCTCAAAATCCAGTGAACGGTGTGACGAAGGTAGATGTTGCAACTACTGTAAATTCAAAAGCACGTGATAGCTACGATTCAAGAAAGCAACAGAATGAAATTGATCCAGAAAAGCAGAAGCTTGCCGCATCATTGTTTGGTGGTTCAACTAAAACTGAGAGAAGAACATCAACTAGTAGCAAGGTTCCAAAAGCTAGTGCTGCAGACAGACCTCAGGATTCAAAAGCTGCAAGTGTACCTAATAAAGCATCTGGGGAGAAAACTAATCAAGTTCAACAACCTCCTCCTCAAGATTTGCTTGACTTGGGTGAACCAACCGTCACTGCTGCACCTCCCACTGTGGACCCATTCATGCAACTGGAAGGACTTCTTGACCCGAGCGCGAGTTCTACAGCAAGTCATAGTGGTGGTGCTGTTGCAAATGCACCTGATATTATGGGACTCTATAGCGGGACTACTTCTAGCGGACAGAGTGGAGATGGTGGCTATATCCCTGCGAGTGGGGATAATTTAAATCTTTTATCCGAGTTGTCAAATGCAGCAGCTGTCAGAGGCACCATGGGAGAAACAATTGTGTCGCCCTTATCACAATCTGTAAAGGGTGCTAATGCTAAAGATTCTTTGGAGAAGGATGCAAAAGTCAGGCAGATGGGTGTGACCCCCACTGGCCAGAATCCCAACTTATTCAGGGACTTGCTTGGCTAA	2913	0.4174	MGSQGGFGQSKEFLDLIKSIGEARSKAEEDRIVIREIETLKRRISEPDIPKRKMKEYIIRLLYVEMLGHDASFGYIHAVKMTHDDNLLSKRTGYLAVTLFLNDDHDLIILIVNTIQKDLKSDNYLVVCAALNAVCRLINEETIPAVLPLIVELLSHGKEAVRKKSVMALHSFYRKSPSSVSHLVSNFRKRLCDNDPGVMGATLCPLFDLINDDPNPYKDLVVSFVSILKQVAEHRLPKSYDYHQMPAPFVQIKLLKILALLGSGDKPSSEHMYTVIGDIIRKGDSSSNIGNAILYESIRTVSSIHPNAKLLEAAADVIAKFLKSDSHNLKYMGIDALGRLIKLSPLIAEQHQLAVIDCLEDPDDTLKRKTFELLYKMTKSSNVEVIVDRMIEYMISISDDHYKTYIASRCVELAEQFAPSNHWFIQTMNKVFEHAGDLVNIKVAHNLMRLIAEGFGEDDDAAYSQLRSSAVESYLRIIGEPKLPSVFLQVICWVLGEYGTADGKHSASYITGKLCDMAEAYSNDEIVKAYAITALTKIYAFEIAAGRKVDMLSECQSLVEELLASHSTDLQQRAYELQAVIGLDARAVEAILPHDASCEDIEVDKNLSFLNGYIQQSIESGAMPYISENERSGMVNMSNFRSHDQQESGQHGLRFEAYEVPKAPVPSKVTPVSLSSTTDLVPVPESLYARETHQVSSVGLASDTGSSELKLRLDGVQKKWGKPTYSSPASSSSNSTSQNPVNGVTKVDVATTVNSKARDSYDSRKQQNEIDPEKQKLAASLFGGSTKTERRTSTSSKVPKASAADRPQDSKAASVPNKASGEKTNQVQQPPPQDLLDLGEPTVTAAPPTVDPFMQLEGLLDPSASSTASHSGGAVANAPDIMGLYSGTTSSGQSGDGGYIPASGDNLNLLSELSNAAAVRGTMGETIVSPLSQSVKGANAKDSLEKDAKVRQMGVTPTGQNPNLFRDLLG	970

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu04g02737	970	PANTHER	AP-4 COMPLEX SUBUNIT EPSILON-1	4	966	-	-
	Tsu04g02737	970	Pfam	Adaptin N terminal region	42	581	IPR002553	GO:0006886\|GO:0016192\|GO:0030117
	Tsu04g02737	970	MobiDBLite	consensus disorder prediction	781	801	-	-
	Tsu04g02737	970	MobiDBLite	consensus disorder prediction	937	970	-	-
	Tsu04g02737	970	MobiDBLite	consensus disorder prediction	813	832	-	-
	Tsu04g02737	970	MobiDBLite	consensus disorder prediction	719	850	-	-
	Tsu04g02737	970	PIRSF	AP4_epsilon	921	970	IPR017109	GO:0015031\|GO:0030124
	Tsu04g02737	970	PIRSF	AP4_epsilon	1	681	IPR017109	GO:0015031\|GO:0030124
	Tsu04g02737	970	PIRSF	AP4_epsilon	633	830	IPR017109	GO:0015031\|GO:0030124
	Tsu04g02737	970	MobiDBLite	consensus disorder prediction	758	772	-	-
	Tsu04g02737	970	SUPERFAMILY	ARM repeat	10	581	IPR016024	-
	Tsu04g02737	970	MobiDBLite	consensus disorder prediction	723	757	-	-
	Tsu04g02737	970	Gene3D	-	3	594	IPR011989	-
	Tsu04g02737	970	PANTHER	ADAPTIN, ALPHA/GAMMA/EPSILON	4	966	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu04g02737	Tsu-Chr4	31458619	31469287	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu04g02737	K12400		-	gmx:100806914	1558.5

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu04g02737	04	31458619	31469287	Tsu04g02737	04	31458619	31469287	ECH