Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02664 ATGTTTGTCAAGAAACTCGTTGAGAAAGCTAATTCCATTAAAAAGCCTGGTGGAAATTCACCAGAAGGGTTAAAAGCTAGTGATGTGGATCCACGAGTGGTATTTCATCAAGGGATACCATCAGTTGGTGCCAAGTTTGCCTATGACCCTATTCAGAAGATACTTGCTCTTTCAACAAAgGATGGCCGGATTAAACTATATGGAAAAGATAATGCTCAAGCCATGCTTGATTCTAGTGAGAATCTACCTAGCAAGTTTTTACAGTTCATCCAGAATCAAGGCATTCTTTTAAATGTTACTTCCAATAATCATATTGAGGTTTGGGACATAGAGAAGAAACTGTTGTCTGATGTGTATGTTGCTAAAGCGGAAATCACTAGTTTTGCAGTCATTCAACATAGCCTCTATATGTATATTGGACATTTTAATGGTAATATATCAGTTTTGAAGCTTGATCAAGATCCGTTGCATATAGTTAAGACGAAATACACAATACCCTTTTCTGCTTCCTATGGGAATTCTGAAGTGCCTGATGATACTACTGTGATGCATATACTGCCTCAACCAGCAGCTGAAAGTAAGAGGGTTCTTATAATCTTTCGAAATGGCCAAATAATATTATGGGATATTCAGGAAAGCAGAACTATTTTCAGAACTGGTGGAAATATTTTGCAACCACTGCATAATAGTGAAACAAAGAAAGTGACTTCTGCATGTTGGTCGTGTCCTTTCGGAAGTAAAGTAGTGGTTGGATACAACAATGGAGAAATCTTCATTTGGAGCATCCCTTCTCTAAATATAGGAAATGGTTCTTCTGCATCTGAGTATTATAGTAGTCAAAGCACTCCTTTGCTCAAACTTAACTTAGGATACAAGTCAGAGAAAATTTCTATAGGATCAATAAAATGGCTTTATGCCGGAGGAAAGGCTAGTCGATTATATGTCATGGGAGCTTCTGATTATGCCAGTTCAAACTTGTTACAGGTAGTGTTGTTGAATGAGCATACAGAATCTCGCACGATTAAGCTAGGACTTCTTTTGTCTGAATGTTGTGTTGACATGGAGATTATATCAACTTCAACTGAACAAGGCAAACAGCATAAACAAGATTCTTTCCTTTTGCTAGGGAAGTCAGGCCATGTGTATCTATACGATGATACTTCCATTGAAAGGTATCTGCTACAATGCCAATCTAAGTCTACACCTTCACTTCCTAAAGACGTGATTGCGAAGTTACCACTGGCAGATTCAAATATCACAACATCAAAGTTCATTTCCAACAATTCCAATGTGTTTTATTCTGAAGATGAGTACTACAGGCAGCTGGTGAAAAATCATCCACCTTTTGTTCCTGttgaaacaaatcaaaaagATGGAATTAACCCAAGTTCTGCAAAATTTTCTGGATTTTCAAAAGTTCAAAACTTGTATATAACTGGACACAGTAATGGAGCTATAAACTTCTGGGATGCTTCATGCCCTCTTTTCACCCCAATTTTGCAATTAAAACAACAGAGTGAAAATGACTTTTCGCTAAGTGGTATACCCTTGACAACATTGTACTTCGATATCAGCTCTCCTCTTCTTGTTACCGGTGACCAAAATGGAACGGTTCGCATTTTTCGATTCAAACCTGAACCATATGCTACCAACATCTTTAGTGGTTCAAAGAAAGGGATAGATCATATTATCCAAAGTGTGAAAATTGTAAAGATTAACGGTGCTGTAACTTCTGTGAACATTGACCATAGCTCGACGCGTCTTGCAGTTGGTTCTGACCAAGGACATGTTTCGGTTTTTAATATGGATGGCCTAACTTTGTCATATCAGAAACATATTGCAAGTGAAATTGCTGCTGGTATCACATCTCTTCAGTTCCTAACATGCAGTTTGCatggttttgataaaaacatTTTAGCGGTTGGAACAAAAGACTCTTCTGTTCTAGCACTTGATAACGAAACTGGTAACACGATGAGCACAGGAACTGTTCAACCTAAGAAGCCCTCTAAAGCTCTATTTGTGCAGGTGGTCGATGGACAAGGTGAGCAATTAACAGGATCAGTTACGAAAGATGGATTCGACTTGAATGAAGTGCATAATATTGAGAATGCAACAACAAAGCAATTGTCCATTCTGCTTTGTTCAGAGAAAGCTTTATATGTCTATTCACTAGTGCATGCAATTCAGgGAGTTAAAAAAGTGCTTCACAAGAAGAAGTTTCATTCCTCTTCTTGTTGCTGGGCATCAACATTTTACGGTCCCTCTGGTGTTGGGCTTGTACTCCTTTTCACCGACGGAAGAGTAGAATTAAGGTCTTTGCCAGAGTTATCCCTGATTGTGGAGACTTCAATTAGAGGGTTCAATTATTCACCTCCAAAATCAAAGTCATTTTCTGATTGGCAAATATGTTCTTCATCCAAAGGAGATATTGTTTTGGTGAATGGAGACCAAGAAATACTTGCTGTCTCAGTGTTGGTCCAAAGGAGTATTTTCAGGATTTTGGATTCTGTTAACTGCATCTACACAAAAGAAATGATGCTATCACAAGAAGAGCTTATCCCTGCCGCAGTCATTcataaggaaaagaaaaagGGTATATTCAGCTCTTTCTCCGTCAGTAAAGAAAAGCATGTCCCCCCCATGGAAACAGAAGATTCTAGAGAAAGTATCCGAGAACTCTCGGTGatcttttcaaaagaaaattttcCTTGTGATGCTGATGATAATGATAACCTGACTATTGGTGAAGACGAGGTCGAATTAAACATAGATGACATTGACCTCGATGATCATGTAGAAAAACGCAAAGATCATGGCATATTGGGACTAGGAGCTATTAATAAGAAGAAATTGACTGGAAAATTTAATGCTCTAAAAGGAAGATTGAAAGAGATGAAGGGCAACATCCAGAAAACATCAGTTAAGGAAGAGCAACAAGAAGAGCAACCTGCTACAGTCGATCAAATTAAGAAGCGATACGGGTTTTCTTCATCTTCCAATGAAACAAGTGTTGCTAAAATGGCAGAAAGCAAGCTACAAGAGAACTTGAAAAAATTGCAgGGTATTAACTTAAGAACTACAGAAATGCAAGATACAGCAAAATCATTTTCATCAATGGCAAACCAAGTACTTCGAACTGCTGAACAGCAACAAGACAAAAGAAGTTGA 3171 0.374 MFVKKLVEKANSIKKPGGNSPEGLKASDVDPRVVFHQGIPSVGAKFAYDPIQKILALSTKDGRIKLYGKDNAQAMLDSSENLPSKFLQFIQNQGILLNVTSNNHIEVWDIEKKLLSDVYVAKAEITSFAVIQHSLYMYIGHFNGNISVLKLDQDPLHIVKTKYTIPFSASYGNSEVPDDTTVMHILPQPAAESKRVLIIFRNGQIILWDIQESRTIFRTGGNILQPLHNSETKKVTSACWSCPFGSKVVVGYNNGEIFIWSIPSLNIGNGSSASEYYSSQSTPLLKLNLGYKSEKISIGSIKWLYAGGKASRLYVMGASDYASSNLLQVVLLNEHTESRTIKLGLLLSECCVDMEIISTSTEQGKQHKQDSFLLLGKSGHVYLYDDTSIERYLLQCQSKSTPSLPKDVIAKLPLADSNITTSKFISNNSNVFYSEDEYYRQLVKNHPPFVPVETNQKDGINPSSAKFSGFSKVQNLYITGHSNGAINFWDASCPLFTPILQLKQQSENDFSLSGIPLTTLYFDISSPLLVTGDQNGTVRIFRFKPEPYATNIFSGSKKGIDHIIQSVKIVKINGAVTSVNIDHSSTRLAVGSDQGHVSVFNMDGLTLSYQKHIASEIAAGITSLQFLTCSLHGFDKNILAVGTKDSSVLALDNETGNTMSTGTVQPKKPSKALFVQVVDGQGEQLTGSVTKDGFDLNEVHNIENATTKQLSILLCSEKALYVYSLVHAIQGVKKVLHKKKFHSSSCCWASTFYGPSGVGLVLLFTDGRVELRSLPELSLIVETSIRGFNYSPPKSKSFSDWQICSSSKGDIVLVNGDQEILAVSVLVQRSIFRILDSVNCIYTKEMMLSQEELIPAAVIHKEKKKGIFSSFSVSKEKHVPPMETEDSRESIRELSVIFSKENFPCDADDNDNLTIGEDEVELNIDDIDLDDHVEKRKDHGILGLGAINKKKLTGKFNALKGRLKEMKGNIQKTSVKEEQQEEQPATVDQIKKRYGFSSSSNETSVAKMAESKLQENLKKLQGINLRTTEMQDTAKSFSSMANQVLRTAEQQQDKRS 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02664 1056 PANTHER TRANSDUCIN/WD40 REPEAT PROTEIN 1 1052 - -
Tsu04g02664 1056 SMART WD40_4 405 490 IPR001680 GO:0005515
Tsu04g02664 1056 SMART WD40_4 503 542 IPR001680 GO:0005515
Tsu04g02664 1056 SMART WD40_4 220 261 IPR001680 GO:0005515
Tsu04g02664 1056 SMART WD40_4 602 652 IPR001680 GO:0005515
Tsu04g02664 1056 SMART WD40_4 111 150 IPR001680 GO:0005515
Tsu04g02664 1056 SMART WD40_4 563 601 IPR001680 GO:0005515
Tsu04g02664 1056 Gene3D - 463 824 IPR015943 GO:0005515
Tsu04g02664 1056 PANTHER LETHAL 2 GIANT LARVAE PROTEIN 1 1052 - -
Tsu04g02664 1056 Gene3D - 44 385 IPR015943 GO:0005515
Tsu04g02664 1056 SUPERFAMILY WD40 repeat-like 47 607 IPR036322 GO:0005515
Tsu04g02664 1056 CDD R-SNARE_STXBP5_6 989 1046 - -
Tsu04g02664 1056 SUPERFAMILY WD40 repeat-like 569 815 IPR036322 GO:0005515
Tsu04g02664 1056 Coils Coil 949 983 - -
Tsu04g02664 1056 Pfam Lethal giant larvae(Lgl) like, C-terminal 732 831 IPR013905 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02664 Tsu-Chr4 30085570 30095488 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02664 - - gmx:100793138 1642.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02664 04 30085570 30095488 Tsu04g02664 04 30085570 30095488 ECH