Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02661 atgggTGACAATAAACGCAAAAGAGGTCGCAAACCCAAAAACCCTTCTCCCGAAACCCTAGAAACTACAACAACCGCCGCAATCACCACCATCGCCGCCGAACCTTCCCCTTCCAACAACGACGATGATTTCTCAATCGGAAACGTTGAACTCATCGACAACAACACCGCTTCTTCTCAACTCGTCCGTAGCCGTGGACGCGGACGTCCTAAAAAACTTCCAACCGTTCCCGACAAGAATCCCGCCGGACGCCGTGTCACACGCGGTGTTGACAGTAACGGTGCTGTCCCGACTGTTCCGGTTGAAGTCGGAGGTGCTATTACCATGGATGCGGATCCTATTTGGGAAAGCGTTTCGGCTAGGGTAATGCCGTCCATGGATTCGGTGGTGAAAGTGTTCTGTGTACATACAGAACCGAATTTTTCTCTACCATGGCAGAGGAAGAGACAATATAGTTCTAGTAGTAGTGGGTTTGTGATAAGTGGGAAAAGGGTTCTCACTAATGCACATTCTGTTGAGCATTATACTCAGGTGAAACTCAAGAAACGTGGCTCTGATACTAAGTATTTGGCTACTGTTCTTGCCATTGGAACTGAGTGTGACATTGCCATGCTTActgttgatgatgatgagttCTGGCAAGGGATGTCGCCTGTGGAGTTTGGGGAGTTGCCTACCCTTCAAGATGCAGTAACTGTTGTGGGCTACCCAATTGGGGGAGACACTATCTCTGTGACCAGTGGTGTTGTATCACGTATTGAGATTTTATCTTATGTCCATGGTTCCACAGAACTTCTAGGTTTACAGaTAGATGCTGCTATAAATTCTGGAAATTCTGGTGGACCTGCATTTAATGGTAAAGGAAACTGTGTGGGGATAGCATTTCAGTCCCTCAAACATGAAGATGTGGAAAATATAGGTTATGTCATTCCAACACCAGTTATCATGCATTTCATCAAGGATTATGAGAAGAATGGAGGATATACTGGGTTCCCTATTCTCGGGGTTGAGTGGCAGAAAATGGAAAATCCTGATCTACGAATGTCAGTAGGCATGAAATCTGATCAGAAAGGTGTGCGTATCAGAAGAATTGATCCTACTTCTCCTGAATCTAAGGTTTTAAAACCGTCAGATGTTATCCTTAGCTTTGATGGGATTGATATTGCCAATGATGGAACAGTTCCATTTCGCCATGGAGAGCGCATTGGGTTCAGTTATCTCATATCACAGAAATATACTGGCGATGACGCAGCAATCAAAGTATTGCGGAATTCAAATGTTCTCAAATTCAATATTAAACTTGATGGTCATAGAAGGCTTATTCCAGCACACAGCAAGGGCAAGCCTCCCTCATATTATATTATTGCAGGATTTGTTTTTTCAACTGTTTCAGTTCCTTATCTTCGTTCTGAGTACGGAAAGGACTATGAGTATGAAGCTCCGGTCAAGATTTTGGATAAACTGCTGTATGCAATGCCACAATCACCTGATGAGCAACTTGTTGTGATTTCCCAGGTGCTGGTGGCTGATATAAACATTGGATACGAAGAGATCGTTAACACCCAGGTCGTTGGTTTTAATGGTAAACCGGTGAAAAACCTTAAGAGCTTGGCTGCTATGGTAGAGAGCTGTGATGACGAGTATCTAAAATTTGATTTAGATTATGAACAGATAGTGGTCCTTCGCACGAAGACTGCAAAAGCTGCCACGTTAGATATTCTTGCAACACACTGCATTCCATCAGCAATGTCTGAAGATCTCAAGTCATAG 1770 0.4333 MGDNKRKRGRKPKNPSPETLETTTTAAITTIAAEPSPSNNDDDFSIGNVELIDNNTASSQLVRSRGRGRPKKLPTVPDKNPAGRRVTRGVDSNGAVPTVPVEVGGAITMDADPIWESVSARVMPSMDSVVKVFCVHTEPNFSLPWQRKRQYSSSSSGFVISGKRVLTNAHSVEHYTQVKLKKRGSDTKYLATVLAIGTECDIAMLTVDDDEFWQGMSPVEFGELPTLQDAVTVVGYPIGGDTISVTSGVVSRIEILSYVHGSTELLGLQIDAAINSGNSGGPAFNGKGNCVGIAFQSLKHEDVENIGYVIPTPVIMHFIKDYEKNGGYTGFPILGVEWQKMENPDLRMSVGMKSDQKGVRIRRIDPTSPESKVLKPSDVILSFDGIDIANDGTVPFRHGERIGFSYLISQKYTGDDAAIKVLRNSNVLKFNIKLDGHRRLIPAHSKGKPPSYYIIAGFVFSTVSVPYLRSEYGKDYEYEAPVKILDKLLYAMPQSPDEQLVVISQVLVADINIGYEEIVNTQVVGFNGKPVKNLKSLAAMVESCDDEYLKFDLDYEQIVVLRTKTAKAATLDILATHCIPSAMSEDLKS 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02661 589 SUPERFAMILY PDZ domain-like 357 439 IPR036034 GO:0005515
Tsu04g02661 589 CDD PDZ_serine_protease 332 432 - -
Tsu04g02661 589 Gene3D - 107 212 IPR043504 -
Tsu04g02661 589 Pfam PDZ domain 441 586 IPR041517 -
Tsu04g02661 589 Gene3D - 213 324 IPR043504 -
Tsu04g02661 589 PANTHER - 4 588 - -
Tsu04g02661 589 Pfam PDZ domain 343 434 IPR001478 GO:0005515
Tsu04g02661 589 PRINTS HtrA/DegQ protease family signature 264 281 IPR001940 GO:0004252|GO:0006508
Tsu04g02661 589 PRINTS HtrA/DegQ protease family signature 185 205 IPR001940 GO:0004252|GO:0006508
Tsu04g02661 589 PRINTS HtrA/DegQ protease family signature 157 169 IPR001940 GO:0004252|GO:0006508
Tsu04g02661 589 PRINTS HtrA/DegQ protease family signature 227 251 IPR001940 GO:0004252|GO:0006508
Tsu04g02661 589 PRINTS HtrA/DegQ protease family signature 373 385 IPR001940 GO:0004252|GO:0006508
Tsu04g02661 589 MobiDBLite consensus disorder prediction 1 24 - -
Tsu04g02661 589 MobiDBLite consensus disorder prediction 57 97 - -
Tsu04g02661 589 Gene3D - 439 589 IPR046449 -
Tsu04g02661 589 Gene3D - 327 438 IPR036034 GO:0005515
Tsu04g02661 589 PANTHER PROTEASE DO-LIKE 9 4 588 - -
Tsu04g02661 589 SUPERFAMILY Trypsin-like serine proteases 126 326 IPR009003 -
Tsu04g02661 589 Pfam Trypsin-like peptidase domain 156 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02661 Tsu-Chr4 30044109 30050202 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02661 K25897 - gmx:100791040 945.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02661 04 30044109 30050202 Tsu04g02661 04 30044109 30050202 ECH