Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02616 ATGAAGAAGGAAATAACATGGAATTGGAGCGTAGCAATAAACACAATCTGTTTAGTTACGGCTATGATTTGCATCACAACAACCGCCACAAAAGAATCACCACAATACACAGTCGTTCACACCGACTCCGAATTCGAAATCAGACTCTATCAAACCTCCGTCTGGATGTCAGCTCCCGCCGTCGACATAATCTCCTTCGAGAAAGCCACATGGTACGGTTTCCACAGATTATTCCAATTCATACAAGGTGCAAATCTCAATTTCTCTCGAATTCCAATGACTTCTCCAGTATTAACAAGTATGGTTCCTGGATCCGGTCCTCTTGACTCACAAGGCTATTATGTTAGTTTGTATTTGCCGGAAAAGTTTCAAGATAATCCACCGGTTCCACTTCCGGAACTTAATATTAAACCGTATGAATTTGTTGGTCACTGTGTTGCGGTGAGAACGTTCTGTGGAGTTGCGAAGGATGAAAGGATTGTTAAAGAGGCGGAGAAGCTGGATAAGAGTTTGAGTAGGTCCCAGTGGAATGAGTCAAAGGTTGAACATGGTGGTTACTCTATTGCACAGTATAAATATACTCCTTTTCGGTTTGCTAAAAGGAGAAATGAGGTTTGGGTTGATATTCATGCTCCTCAATTAGGTTGTGGTGTTGGTGTTGCAGCATATTGA 672 0.4196 MKKEITWNWSVAINTICLVTAMICITTTATKESPQYTVVHTDSEFEIRLYQTSVWMSAPAVDIISFEKATWYGFHRLFQFIQGANLNFSRIPMTSPVLTSMVPGSGPLDSQGYYVSLYLPEKFQDNPPVPLPELNIKPYEFVGHCVAVRTFCGVAKDERIVKEAEKLDKSLSRSQWNESKVEHGGYSIAQYKYTPFRFAKRRNEVWVDIHAPQLGCGVGVAAY 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02616 223 SUPERFAMILY Probable bacterial effector-binding domain 21 209 IPR011256 -
Tsu04g02616 223 Gene3D Regulatory factor, effector binding domain 31 213 IPR011256 -
Tsu04g02616 223 Pfam SOUL heme-binding protein 32 207 IPR006917 -
Tsu04g02616 223 PANTHER SOUL HEME-BINDING PROTEIN-RELATED 11 210 - -
Tsu04g02616 223 PANTHER HEME-BINDING PROTEIN-RELATED 11 210 IPR006917 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02616 Tsu-Chr4 29583252 29584267 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02616 - - gmx:100306073 304.293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02616 04 29583252 29584267 Tsu04g02616 04 29583252 29584267 ECH