Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02612 ATGTCATCCGCAGTAAGAGATCATAGGATCATTCGCCGAATGACAAGCCTTCCACGAAACTTAATGAGCTTCATAGGAataggaagaagaagaaatcaaaatgCAAATTTTCCATTGCAACCTCTAGAGACTCCTCAACCACAAAACTCCATAGCAACTCCAGAAGAGTGGATTTTTCTAGACAAATTTGAGCAACAATATGGCACAAAACATCCCTTCTTCTACGCGTGTCGTTTCATTGAAGCTATGAAGTTAGCAAAACAAGATCAAAAGTTTGTGTTCATGTATCTCCATTCACAAGAACACCCTTTTGCAAACGTGTTCTGCAAGGAAACCTTGTGTTCTGAGCTAGTGACTCAGTTTCTTGATGTGAATTTTGTTTGTTGGGGTGCACTTGCAGATAGAGGAGAGGGTTTGCAAATGGTTGCATCATTGAGACCTTCTAGTTTTCCTTGTTGTGCTGTCATAAGCCCTGCTCCTAGTGATGGCATAATTGTGTTGCAACAGCTAGAGGGACCACTTTCACCAGCAGAGCTAGTGGAGATTCTACAAACTACATTGGAAGAACAAGGGTTGGCTTTTGGGAGTGCTAAAGCTAAGCGCGATGAAAAGATCCGAGCAGATCGTAGACTTAGAGAAGAGCAAGATGCTGCATATTTTAAGGCTTTACAAATAGACAAGGAAAAAGAGAGACTCAAAAGTTTATCTTCAAAAGAGAGAGTTCAGAAGCCGGTGGAAACTCAAAACACTAGAAGTTATGGGAAGTTAAGGAACAATTATGTTAATGTCACTAAATTTCATAACAGAGGAAATGGTTCCACAAGTGAAAAACAAGACAAAGGAATCACAAGTAATGGAAAGGAGACTCAAGTCGCGCAGATACTCATAAGGTTTCCAAATGGAGAAAGAAGAGAACATAGTTTCCTATGCACAGACAAAATTCAGTCcattttttcatatattgaTTCATTAGGTTTGTGTGGGATTGAGAACTACAGATTGATATCAAATTTTCCAAGAAGAGTTTATGGTGTTGATCAAATGAGAATGACTATTAAAGATGTTGGCTTGTATCCTAAAGCTAGTTTGTTCTTGGAGCCTTTGTGA 1107 0.3812 MSSAVRDHRIIRRMTSLPRNLMSFIGIGRRRNQNANFPLQPLETPQPQNSIATPEEWIFLDKFEQQYGTKHPFFYACRFIEAMKLAKQDQKFVFMYLHSQEHPFANVFCKETLCSELVTQFLDVNFVCWGALADRGEGLQMVASLRPSSFPCCAVISPAPSDGIIVLQQLEGPLSPAELVEILQTTLEEQGLAFGSAKAKRDEKIRADRRLREEQDAAYFKALQIDKEKERLKSLSSKERVQKPVETQNTRSYGKLRNNYVNVTKFHNRGNGSTSEKQDKGITSNGKETQVAQILIRFPNGERREHSFLCTDKIQSIFSYIDSLGLCGIENYRLISNFPRRVYGVDQMRMTIKDVGLYPKASLFLEPL 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02612 368 ProSiteProfiles UBX domain profile. 287 365 IPR001012 GO:0005515
Tsu04g02612 368 Gene3D Glutaredoxin 56 192 - -
Tsu04g02612 368 PANTHER UBIQUITIN-ASSOCIATED (UBA) PROTEIN-RELATED 8 367 - -
Tsu04g02612 368 SMART 45neu3 58 184 IPR006577 -
Tsu04g02612 368 SUPERFAMILY Thioredoxin-like 53 192 IPR036249 -
Tsu04g02612 368 SUPERFAMILY Ubiquitin-like 285 367 IPR029071 -
Tsu04g02612 368 Pfam UBX domain 288 366 IPR001012 GO:0005515
Tsu04g02612 368 SMART ubx_3 285 367 IPR001012 GO:0005515
Tsu04g02612 368 Gene3D - 286 367 - -
Tsu04g02612 368 CDD UBX 294 366 - -
Tsu04g02612 368 PANTHER FAS-ASSOCIATED PROTEIN 8 367 - -
Tsu04g02612 368 CDD UAS 79 189 - -
Tsu04g02612 368 MobiDBLite consensus disorder prediction 265 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02612 Tsu-Chr4 29547488 29549873 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02612 K18726 - gmx:100775212 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02612 04 29547488 29549873 Tsu04g02612 04 29547488 29549873 ECH