Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02549 ATGAATATTAATGGCTTCACCACTACCTTCCTCCACCTTCAACACAAACACAACCCCATCATCTCACTCAATTACCAATATCTCACTTCCATCAAAACCCTAGCACCTCATATTACATGTCTTGCTATCCACCATAACCTTCTCTATGCAGCTTCTCTCAACCTCATCAATGTCTTTGACCTCTCTTCATCTCATTACACACACATTGACACCTTCAACGAAAGCTCCGGTTCAGGTTTTGTCAAGTCCATCACCTTCAACGGTTCAAAAGTCTTCACTGCTCACCAAGACTGTAAAATTCGTGTATGGCTTATCACATCTTCAAAACAACACCGTCTTATCTCCTCCCTTCCAACTGTCAAAGACCGGTTGCGCCGCGGCATCGTTCCTAAAAACTACGTCAACATTCGACGTCACCGGAAGAGTCTATGGATCCAACATAATGACACTGTGTCAGGTTTAGCAGTAAACCAGAAAGAGAAACTCATGTACTCGGTTTCATGGGACAAAACTTTTAAGATTTGGGACTTATCTTCCGGTTACCGGTGTTTGGAGTCGTTAAACGGTCATGACGATGCTATCAACGCTGTTGTTGTTTCCGATAACGGCGCTGTTTACACGGCTTCAGCTGATGGGTGTATCAAGGTTTGGAAGATGGATGATCAGGTGAAACGCTACATGTTAGTGAGTACGGTGGGAAAGCATAAACCAGCCGTTAATGCGTTGGCATTGAACGGAAATGGTACAGCTTTGTTTTCCGGTGGGAGTGATGGGACAATTTGTTTGTGGGAGgaaaaagaaaacgaaaacGACGTCGTGTTGATGGAAACGTTGAAGGGTCATAGTGGGGCTATACTTTGTTTGGTCACCGTTGATGATTTGTTAGCGAGTGGCTCAGCGGATCTGACGGTGAGGATTTGGCAGAGGGAAAAGGGGAATGGTGGGTATTATTGTAGTGGAGTGTTGGAAGGACATGAAAAACCGGTTAAGTCGTTGGTGGCGGTTTCCGGTGGTAGTTGTggtggtgaagatgatgatgaatctgatggtgatgGAGTTGTGACACTTTTTAGTGGAAGCCTTGATGGGGATATTAAAGTTTGGGAagtgtttggtttggtttaa 1125 0.4222 MNINGFTTTFLHLQHKHNPIISLNYQYLTSIKTLAPHITCLAIHHNLLYAASLNLINVFDLSSSHYTHIDTFNESSGSGFVKSITFNGSKVFTAHQDCKIRVWLITSSKQHRLISSLPTVKDRLRRGIVPKNYVNIRRHRKSLWIQHNDTVSGLAVNQKEKLMYSVSWDKTFKIWDLSSGYRCLESLNGHDDAINAVVVSDNGAVYTASADGCIKVWKMDDQVKRYMLVSTVGKHKPAVNALALNGNGTALFSGGSDGTICLWEEKENENDVVLMETLKGHSGAILCLVTVDDLLASGSADLTVRIWQREKGNGGYYCSGVLEGHEKPVKSLVAVSGGSCGGEDDDESDGDGVVTLFSGSLDGDIKVWEVFGLV 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02549 374 CDD WD40 30 369 - -
Tsu04g02549 374 SMART WD40_4 225 264 IPR001680 GO:0005515
Tsu04g02549 374 SMART WD40_4 138 176 IPR001680 GO:0005515
Tsu04g02549 374 SMART WD40_4 315 369 IPR001680 GO:0005515
Tsu04g02549 374 SMART WD40_4 65 104 IPR001680 GO:0005515
Tsu04g02549 374 SMART WD40_4 271 308 IPR001680 GO:0005515
Tsu04g02549 374 SMART WD40_4 24 60 IPR001680 GO:0005515
Tsu04g02549 374 SMART WD40_4 180 218 IPR001680 GO:0005515
Tsu04g02549 374 Gene3D - 133 226 IPR015943 GO:0005515
Tsu04g02549 374 PRINTS G protein beta WD-40 repeat signature 163 177 IPR020472 -
Tsu04g02549 374 PRINTS G protein beta WD-40 repeat signature 295 309 IPR020472 -
Tsu04g02549 374 PRINTS G protein beta WD-40 repeat signature 356 370 IPR020472 -
Tsu04g02549 374 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 187 220 - -
Tsu04g02549 374 ProSitePatterns Trp-Asp (WD) repeats signature. 356 370 IPR019775 -
Tsu04g02549 374 PANTHER TRANSDUCIN/WD40 REPEAT PROTEIN 26 370 - -
Tsu04g02549 374 ProSiteProfiles Trp-Asp (WD) repeats profile. 232 273 IPR001680 GO:0005515
Tsu04g02549 374 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 26 370 IPR045182 -
Tsu04g02549 374 Gene3D - 20 124 IPR015943 GO:0005515
Tsu04g02549 374 Gene3D - 227 373 IPR015943 GO:0005515
Tsu04g02549 374 SUPERFAMILY WD40 repeat-like 28 371 IPR036322 GO:0005515
Tsu04g02549 374 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 144 180 - -
Tsu04g02549 374 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 220 IPR001680 GO:0005515
Tsu04g02549 374 Pfam WD domain, G-beta repeat 276 307 IPR001680 GO:0005515
Tsu04g02549 374 Pfam WD domain, G-beta repeat 231 263 IPR001680 GO:0005515
Tsu04g02549 374 Pfam WD domain, G-beta repeat 146 176 IPR001680 GO:0005515
Tsu04g02549 374 Pfam WD domain, G-beta repeat 182 218 IPR001680 GO:0005515
Tsu04g02549 374 Pfam WD domain, G-beta repeat 318 368 IPR001680 GO:0005515
Tsu04g02549 374 ProSiteProfiles Trp-Asp (WD) repeats profile. 144 180 IPR001680 GO:0005515
Tsu04g02549 374 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 278 308 - -
Tsu04g02549 374 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 232 264 - -
Tsu04g02549 374 ProSiteProfiles Trp-Asp (WD) repeats profile. 278 308 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02549 Tsu-Chr4 28731665 28733175 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02549 147 321 Miscellaneous Gene Families AT5G08390 27.473 1.36e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02549 - - mtr:MTR_4g104410 588.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02549 04 28731665 28733175 Tsu04g02549 04 28731665 28733175 ECH