Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02548 ATGGCAAAATCTCGTAAGTCGCAAGAAGAAATTGCGATTGAAGCTATCAATCATGCTTTGAAAGCTCTTCGGAAACGCCATTTGCTTGAAGAAGCTGCTCATGCTCCTGCAATTCTCGCACTTTCTCGACCTATCATTTCTCAGGGTTCTGAATGGAAAGAGAAAGCAGATAACTTGGAATTGGAACTTCAGCAATGCTATAAAGCTCAATCTCGGTTGTCGGAGCAACTTGTTGTGGAAGTAGCTGAATCCCGAGTTTCAAAAGGTTTGCTTCAAGAGAAAGAAACTGCAATTGTTGATATGCAGAAGGAGTTAACAGAATTGAGGGATGAGTGCTCTCAATTAAAGACGGATTTAGAACAAAAGGTTAAAGAAGTAGAATTAGTTTTGAGTGAGAATTCGGAACTTAAAGCACAGCTAGAGCAGATGACTACCAAAGTCAATGCAGCTGAAGCTGAAAATAAGATGTTGATTGACCGTTGGATGTTAGAAAAAATGAAGGATGCTGAACGGCTAAATGAGGCAAATGCACTGTACGAAGACATGGTTCAACGGCTAAGGGCTAGTGGTCTAGAACAACTTGCAAGGGAACAGGTGGATGGAATTGTTCGGCGAAGTGAAGAAGGTGCTGAATTCTTTTCAGAGTCAAACATCCCTTCCAATTGCAAATACAGAATAAATGCACATGAAGGAGGTTGTGCTTCTTTACTGTTTGAGTACAATTCTAGTAAATTGATTACCGGGGGACAGGATCGTTCAGTTAAAGTGTGGGATACAAATACAGGATCCTTAAGTTCTAGTCTTAATGGTTGCCTTGGCTCAGTATTGGATCTCACTATCACCCATGATAATCGATCTGTTATTGCTGCAAGCAGCTCAAATAACTTGTATGTGTGGGATCTGAACACAGGCCGGGTCCGTCATACCCTTACTGGACACACAGATAAAGTTTGTGCGGTTGATGTCAGCAAGGTTTCAAGTCGTCATGTTGTCAGTGCAGCTTATGACCGTACTATAAAAGTTTGGGACTTGATGAAAGGTTACTGCACAAATACAATCATGTTTCCCAGCAACTGTAATGCTCTTTGCTTCAGTGTAGATGGACAGACGATATTTTCTGGACATGTTGATGGCAATCTTCGGTTATGGGACATTCAGAGTGGAAAGCTACTAAGCGAGGTTGCTGCACATTCACTTGCTGTCACGTCAATTTCCCTTTCTCGAAATGGAGATATTGCATTGACTAGTGGACGGGATAATTTGCACAATTTGTTTGATGTGCGGTCTTTAGAAGTTTGTGGCACATTACGAGCCACAGTAAACAGAGTGGCTTCTAATTGGAGTCGCTCATGTATCAGTCCAGACAACAGTCATGTTGCTGCTGGATCTGCCGATGGATCTGTTCATATATGGTCAATTTCTAAAGGTGAAATCGTCAGTACTCTGAAGGAGCATACTTCTTCTGTTCTTTGTTGTAGTTGGAATGGAATGGGAAAGCCCCTTGCTTCAGCTGACAGGAATGGGATTGTATCCATTTGGTCATAA 1545 0.4188 MAKSRKSQEEIAIEAINHALKALRKRHLLEEAAHAPAILALSRPIISQGSEWKEKADNLELELQQCYKAQSRLSEQLVVEVAESRVSKGLLQEKETAIVDMQKELTELRDECSQLKTDLEQKVKEVELVLSENSELKAQLEQMTTKVNAAEAENKMLIDRWMLEKMKDAERLNEANALYEDMVQRLRASGLEQLAREQVDGIVRRSEEGAEFFSESNIPSNCKYRINAHEGGCASLLFEYNSSKLITGGQDRSVKVWDTNTGSLSSSLNGCLGSVLDLTITHDNRSVIAASSSNNLYVWDLNTGRVRHTLTGHTDKVCAVDVSKVSSRHVVSAAYDRTIKVWDLMKGYCTNTIMFPSNCNALCFSVDGQTIFSGHVDGNLRLWDIQSGKLLSEVAAHSLAVTSISLSRNGDIALTSGRDNLHNLFDVRSLEVCGTLRATVNRVASNWSRSCISPDNSHVAAGSADGSVHIWSISKGEIVSTLKEHTSSVLCCSWNGMGKPLASADRNGIVSIWS 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02548 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 226 267 IPR001680 GO:0005515
Tsu04g02548 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 309 IPR001680 GO:0005515
Tsu04g02548 514 Coils Coil 56 76 - -
Tsu04g02548 514 Gene3D - 192 357 IPR015943 GO:0005515
Tsu04g02548 514 Gene3D - 358 449 IPR015943 GO:0005515
Tsu04g02548 514 Gene3D - 450 514 IPR015943 GO:0005515
Tsu04g02548 514 SUPERFAMILY WD40 repeat-like 218 513 IPR036322 GO:0005515
Tsu04g02548 514 Coils Coil 91 160 - -
Tsu04g02548 514 Pfam Anaphase-promoting complex subunit 4 WD40 domain 358 405 IPR024977 -
Tsu04g02548 514 SMART ire1_9 450 483 IPR018391 -
Tsu04g02548 514 SMART ire1_9 278 311 IPR018391 -
Tsu04g02548 514 SMART ire1_9 364 395 IPR018391 -
Tsu04g02548 514 PANTHER AUTOPHAGY PROTEIN 16-LIKE 8 514 IPR045160 GO:0000045
Tsu04g02548 514 SMART WD40_4 219 258 IPR001680 GO:0005515
Tsu04g02548 514 SMART WD40_4 429 472 IPR001680 GO:0005515
Tsu04g02548 514 SMART WD40_4 387 426 IPR001680 GO:0005515
Tsu04g02548 514 SMART WD40_4 261 300 IPR001680 GO:0005515
Tsu04g02548 514 SMART WD40_4 303 343 IPR001680 GO:0005515
Tsu04g02548 514 SMART WD40_4 346 384 IPR001680 GO:0005515
Tsu04g02548 514 SMART WD40_4 475 514 IPR001680 GO:0005515
Tsu04g02548 514 Coils Coil 6 26 - -
Tsu04g02548 514 Gene3D - 91 162 - -
Tsu04g02548 514 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 226 263 - -
Tsu04g02548 514 Coils Coil 169 189 - -
Tsu04g02548 514 PANTHER AUTOPHAGY-RELATED 16, ISOFORM F 8 514 - -
Tsu04g02548 514 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 310 344 - -
Tsu04g02548 514 ProSitePatterns Trp-Asp (WD) repeats signature. 371 385 IPR019775 -
Tsu04g02548 514 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 482 514 - -
Tsu04g02548 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 310 352 IPR001680 GO:0005515
Tsu04g02548 514 ProSitePatterns Trp-Asp (WD) repeats signature. 330 344 IPR019775 -
Tsu04g02548 514 PRINTS G protein beta WD-40 repeat signature 245 259 IPR020472 -
Tsu04g02548 514 PRINTS G protein beta WD-40 repeat signature 330 344 IPR020472 -
Tsu04g02548 514 PRINTS G protein beta WD-40 repeat signature 371 385 IPR020472 -
Tsu04g02548 514 ProSitePatterns Trp-Asp (WD) repeats signature. 245 259 IPR019775 -
Tsu04g02548 514 Pfam WD domain, G-beta repeat 306 343 IPR001680 GO:0005515
Tsu04g02548 514 Pfam WD domain, G-beta repeat 222 258 IPR001680 GO:0005515
Tsu04g02548 514 Pfam WD domain, G-beta repeat 440 472 IPR001680 GO:0005515
Tsu04g02548 514 Pfam WD domain, G-beta repeat 477 514 IPR001680 GO:0005515
Tsu04g02548 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 361 393 IPR001680 GO:0005515
Tsu04g02548 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 482 514 IPR001680 GO:0005515
Tsu04g02548 514 CDD WD40 222 514 - -
Tsu04g02548 514 Pfam Autophagy protein 16 (ATG16) 50 173 IPR013923 -
Tsu04g02548 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 453 481 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02548 Tsu-Chr4 28718597 28721773 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02548 301 513 Miscellaneous Gene Families AT5G08390 20.548 8.21e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02548 K17890 - gmx:100806054 884.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02548 04 28718597 28721773 Tsu04g02548 04 28718597 28721773 ECH