Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02536 ATGGCTTCGCAGGATAAAGGTAGACCGTTGCCTAAATTCGGCGAGTGGGATGTGAACAATCCTGCATCAGCCGAAGGTTTTACTGTCATTTTCAACAAAGCTAGAGATGAGAAGAAGACCAATACGACTAACAATGTTACTCCACGTAGAAATGGTCAATCCTATCAGAATGAACCTGAATATCCTCAAAAGAGTAAATGGTTTTGCTGTGGATGA 216 0.4167 MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTNTTNNVTPRRNGQSYQNEPEYPQKSKWFCCG 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02536 71 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 1 70 IPR040387 -
Tsu04g02536 71 MobiDBLite consensus disorder prediction 44 61 - -
Tsu04g02536 71 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 5 40 IPR008700 -
Tsu04g02536 71 PANTHER RPM1-INTERACTING PROTEIN 4-LIKE 1 70 - -
Tsu04g02536 71 MobiDBLite consensus disorder prediction 33 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02536 Tsu-Chr4 28581135 28582163 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02536 - - zju:107418198 116.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02536 04 28581135 28582163 Tsu04g02536 04 28581135 28582163 ECH