Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02530 ATGGCATCAGAAGGAGAAGAATCTCAGCAGCCACAACTTATCCTAGCCGACAAGCTCTTCCTGCTAAAGCAATCGGATGTTCAAGACATTGACAAAGTTCGATTTAGAGAAGATGTTTTCAATTTCGTTAAGGAACATGatATGGTTCCTTTGTACGAAACCCTAGTTGCTGATTCCGTTTTGGATATGGATCGTGCTCTTTTGGACTCTATGCGTGCTAAAATTGACGATGAACTTAAGAAGCTCGATGAAAAGATTGCTGATGCCGAAGAAAACTTAGGCGAGAGTGAAGTCCGTGAGGCTCACTTGGcaaaatcattgtttttcatCCGGATTGGGGACAAGGAGAAAGCCTTGGAACATCTCAAGGTAACAGAAACCAAGACTGTTGCAGTGGGGCAGAAGATGGACCTGGTGTTCTATACATTGCAACTTGGTTTCTTTGACATGGATTTTGATCTCATTTCCAAAAGCATTGACAAAGCTAAAAGCTTGTTTGAAGAAGGTGGTGATTGGGAGAGGAAGAACCGTTTGAAAGTGTATGAAGGCCTCTACTGCATGTCCACTAGAAATTTCGAGAAGGCTGCCTCATTGTTTTTGGATTCTATTTCAACCTTCACAACCTATGAACTCTTTCCGTACGACACCTTCATATTTTACACCGTTTTGACAAGCATCATAACATTGGATAGAGTTTCTTTAAAGCAAAAGGTAGTGGATGCTCCTGAGATCTTGACAGTGATTGGCAAAATTCCACATCTTTCAGAGTTTTTGAACTCCTTATATGATTGTCAATACAAGTCTTTCTTCTCAGCTTTTGCTGGCCTGACGGAGCAAATTAAGTTGGATCGCTACCTGCATTCACACTTCCGGTATTATATGAGAGAGATCAGAACTGTTATTTATTCACAGTTTTTGGAATCGTATAAGAGTGTGACAATTGAAGCCATGGCCAAAGCATTTGGAGTATCAGTGGACTTCATTGATGTggaGCTATCACGCTTTATCGCAGCTGGGAAACTTCATTGCAAAATCGATAAAGTTGCAGGCGTTCTTGAAACGAACCGCCCAGATGCCAAGAATGCTCTTTACCAAGCAACAATTAAGCAAGGAGACTTCTTATTGAATAGGATCCAGAAGTTATCGCGAGTGATTGATCTCtag 1164 0.4055 MASEGEESQQPQLILADKLFLLKQSDVQDIDKVRFREDVFNFVKEHDMVPLYETLVADSVLDMDRALLDSMRAKIDDELKKLDEKIADAEENLGESEVREAHLAKSLFFIRIGDKEKALEHLKVTETKTVAVGQKMDLVFYTLQLGFFDMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFEKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIITLDRVSLKQKVVDAPEILTVIGKIPHLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHSHFRYYMREIRTVIYSQFLESYKSVTIEAMAKAFGVSVDFIDVELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02530 387 SMART PINT_4 288 371 IPR000717 -
Tsu04g02530 387 Pfam PCI domain 253 355 IPR000717 -
Tsu04g02530 387 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 288 371 - -
Tsu04g02530 387 PANTHER 26S PROTESOME SUBUNIT 6 2 387 IPR019585 -
Tsu04g02530 387 PANTHER BNAC08G11800D PROTEIN 2 387 - -
Tsu04g02530 387 Coils Coil 68 99 - -
Tsu04g02530 387 Pfam 26S proteasome subunit RPN7 64 237 IPR045135 -
Tsu04g02530 387 Gene3D - 19 338 - -
Tsu04g02530 387 ProSiteProfiles PCI domain profile. 191 359 IPR000717 -
Tsu04g02530 387 SUPERFAMILY "Winged helix" DNA-binding domain 283 364 IPR036390 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02530 K03037 - gmx:100810692 705.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02530 04 28536938 28540265 Tsu04g02530 04 28536938 28540265 ECH