Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02498 ATGGATTCAATTCCTTCTTCCGGCGGTGCTTCTCAATACCTCGTCAATCTTCCCTCTCGCGGCACTTTCACTTCCCCTTCCATTTCTTGCAATTCGAATGGGATGCGGGTTTATGTATGCGATCATGAGACCACACCACCAGAAGGGCAACATATTAAGACAAATACACAGAACATACTGATCAGAGCACTCAAATTGAAGAATGTATCTGACAATTCAAAAAAGAGAACTGCTGAAAAGGTTTTGGGAGGTTCAGCCAAGAAAccaaataatcaaacaaactctCAACAAGATGGATCAAATGGTCAAACATCCAATAAGAACTTCCAGAGCTTGACTGTAGAGAGGCTTCGAGCTCTTTTGAGAGCTAAAGGTCTTCCAACCAAAGGAAAGAAGGAGGAGCTTATTACGCGTCTAAAAGATGCAGATGGGCAAGCATAG 441 0.4127 MDSIPSSGGASQYLVNLPSRGTFTSPSISCNSNGMRVYVCDHETTPPEGQHIKTNTQNILIRALKLKNVSDNSKKRTAEKVLGGSAKKPNNQTNSQQDGSNGQTSNKNFQSLTVERLRALLRAKGLPTKGKKEELITRLKDADGQA 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02498 146 Pfam SAP domain 109 143 IPR003034 -
Tsu04g02498 146 MobiDBLite consensus disorder prediction 68 111 - -
Tsu04g02498 146 Pfam Det1 complexing ubiquitin ligase 14 67 IPR018276 -
Tsu04g02498 146 PANTHER DET1- AND DDB1-ASSOCIATED PROTEIN 1 3 141 - -
Tsu04g02498 146 SMART sap_9 109 143 IPR003034 -
Tsu04g02498 146 PANTHER DET1- AND DDB1-ASSOCIATED PROTEIN 1 3 141 IPR033575 GO:0032434
Tsu04g02498 146 SUPERFAMILY SAP domain 104 141 IPR036361 -
Tsu04g02498 146 MobiDBLite consensus disorder prediction 86 111 - -
Tsu04g02498 146 MobiDBLite consensus disorder prediction 68 82 - -
Tsu04g02498 146 ProSiteProfiles SAP motif profile. 109 143 IPR003034 -
Tsu04g02498 146 Gene3D SAP domain 85 146 IPR036361 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02498 - - aprc:113850031 189.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02498 04 28227109 28230687 Tsu04g02498 04 28227109 28230687 ECH