Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02471 ATGGATGGATCAACCGGTAACCGAAATAATCCACCGTCCGCCATGTCACCACCGCCTGAACCATCACCGGAAAGTCTCCGTCATGTGGAGCGTATGATTAATTCCAACCATTATACATCACCTTCAAGAACAATCTACTCCGATAGGTTTATTCCGAGTAGATCTGCGTCTAAATTCGCTCTCTTTGATATCAATACTCCGACGGAAGGGCGCGATGATAGTTCTAGCGCTTACACCACTCTTCTTCGTACCGCTTTGTTCGGACCTGATGTTGCTGGTGTTGTAGCTCCTGTAACGCCTGAGAAGACGAATTCACCGTCGATGACATTACCTAGTAGGAATATTTTTAGGTATAAGACGGAGACTCGTCAGTCCATGCATTCTCTTTCGCCGTTTATGTCTGATGATGTTGTTCCCGGTGTTAATCATAGTCCGGTTAAAGCTCCCAGGAAGGTTCCTCGATCGCCTTATaaggTTTTAGATGCACCTGCATTGCAAGATGATTTTTATCTGAATCTGGTGGATTGGTCTTCGCACAATGTGTTGGCTGTTGGTTTGGGAAATTGTGTTTATCTCTGGAATGCTTGTAGCAGCAAGGTAACTAAATTATGCGACTTAGGAGTTGATGATTGTGTTTGTTCTGTTGGCTGGGCTCAACGTGGTACTCATCTTGCTGTTGGAACGAACAATGGTAAAGTTCAGATTTGGGATGCAGCACGATGCAAGAAGATAAGATCTATGGAGGGTCATCGGTTACGGGTCGGGGCCTTGGCCTGGAGTTCATCTCTTTTATCTTCTGGTGGTCGGGATAAGAATATTTATCAACGAGATATACGCACACAAGAGGATTTTGTTAGTAAACTGTCAGGACACAAATCAGAGgtTTGTGGACTGAAGTGGTCATATGATAACCGCGAGTTAGCATCTGGAGGAAATGACAACAGATTGTTTGTTTGGAATCAACACTCGACCCAGCCTGTCCTGAAGTACTGTGAGCACACAGCAGCTGTTAAAGCTATTGCATGGTCTCCTCATCTTCATGGACTTCTTGCATCTGGAGGAGGAACTGCAGATCGATGTATCCGCTTCTGGAATACAACCACAAACTCACACTTAAGCTGTATGGACACTGGAAGTCAGGTATGA 1146 0.4476 MDGSTGNRNNPPSAMSPPPEPSPESLRHVERMINSNHYTSPSRTIYSDRFIPSRSASKFALFDINTPTEGRDDSSSAYTTLLRTALFGPDVAGVVAPVTPEKTNSPSMTLPSRNIFRYKTETRQSMHSLSPFMSDDVVPGVNHSPVKAPRKVPRSPYKVLDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGVDDCVCSVGWAQRGTHLAVGTNNGKVQIWDAARCKKIRSMEGHRLRVGALAWSSSLLSSGGRDKNIYQRDIRTQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKYCEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNSHLSCMDTGSQV 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02471 381 ProSiteProfiles Trp-Asp (WD) repeats profile. 288 329 IPR001680 GO:0005515
Tsu04g02471 381 ProSiteProfiles Trp-Asp (WD) repeats profile. 212 246 IPR001680 GO:0005515
Tsu04g02471 381 MobiDBLite consensus disorder prediction 1 25 - -
Tsu04g02471 381 Pfam WD domain, G-beta repeat 325 365 IPR001680 GO:0005515
Tsu04g02471 381 Pfam WD domain, G-beta repeat 285 320 IPR001680 GO:0005515
Tsu04g02471 381 PANTHER PROTEIN FIZZY-RELATED 1 11 381 - -
Tsu04g02471 381 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 11 381 IPR033010 GO:0010997|GO:0097027|GO:1904668
Tsu04g02471 381 Pfam Anaphase-promoting complex subunit 4 WD40 domain 205 261 IPR024977 -
Tsu04g02471 381 SMART WD40_4 281 320 IPR001680 GO:0005515
Tsu04g02471 381 SMART WD40_4 323 365 IPR001680 GO:0005515
Tsu04g02471 381 SMART WD40_4 153 194 IPR001680 GO:0005515
Tsu04g02471 381 SMART WD40_4 240 277 IPR001680 GO:0005515
Tsu04g02471 381 SMART WD40_4 197 237 IPR001680 GO:0005515
Tsu04g02471 381 Gene3D - 112 381 IPR015943 GO:0005515
Tsu04g02471 381 SUPERFAMILY WD40 repeat-like 164 372 IPR036322 GO:0005515
Tsu04g02471 381 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 288 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02471 Tsu-Chr4 27912734 27916327 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02471 224 368 Miscellaneous Gene Families AT5G08390 28.571 7.08e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02471 K03364 - gmx:100780928 686.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02471 04 27912734 27916327 Tsu04g02471 04 27912734 27916327 ECH