LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu04g02408	ATGCGGGTTAAGGAAATGCACCCGTTGTGTTGCATCTCATTGGAGAGTCCAGGGATCGGAAGTCATTCACCGGAGCCAGACGCGGCGGCACTTGCAAGGACGAGAAGTTTACCGGCGAGTGGATCTGACCGCATTAGTCGCCGTGGATCAGAGGCAACGGTTGCCGGTGTTCTTTACAAGTGGACTAATTACGGTAAAGGATGGAGATCCCGATGGTTTCTTCTCCGCAATGGTGTACTTTCTTACGCCAAGATCCGGTGGCCGGAGAATCTCAATCTATTCTCTTCAATCGACGATGTTCGCTTAATCGGAGATGTAACTGCTAACCGTTTAGCTAGAATGGATAGAGATGCCGGAAACGCTGTTCGCCGGAAGAATCATAAaccttcttcatcttcctcttcttctccatcAGTGGTTCATCTGAAGATCTCGTCGTTTAGAGAGAGCAAATCAGACGATAGAAAGTTCTATATATTTACAGCAACAAAGACACTTCATCTGAGAACTGATTCAAGGAAAGATCGTGTAGCTTGGATACAAGCTTTGGTTTCAACTCGTAGTTTGTATCCACTAAGTGGACATCATCTATCCCTTTTACCATATCATATATCTGTATCTACCGAGAGGCTTAAGAAACGATTGATTGAAGAGGGTAGCAGTGAGAATCTTGTCAAGGAGTGTGAGCAAATCATGCTTGCAGAGTTTTCTGAATTACAAGAACAGCTTAAAATTCTTTGTCAAGAAAGATCAAGTTTGTTTGATACAATTCGGCAGTTGGagGCAGCTAACATTGAACCTGAGGGCTCTGCCTTGCATGACAGTGAATACCAATTAACAAAGAATGGATTTTCAAGTCTCGGGCGTGGAAAATATAGTGAATGCAGTACAACGGAATCATCCGACGATATTGAGAAACAAGAGTTAGAGGAAGTGtcagaagaagatgaaatcTCATATTATGATAGTAGAGACTATTTTACAGAACCTAGTTTTAGTTGTGGGTCAAAAGGAACTCTGGATCAGGTGAAAATGTCTGGGGAAGCTGTTAGACAATGCATTGATATGGAAAACAGTCATGTTGAGACAATGATATATGATGATTATGGGTTTCCTCAGGTATCAAGGCGAACAAAGCTTCCGGATCCCGTTGAGAAGGAGAAGGGAGTTAGTCTTTGGTCAATGATCAAAGATAATGTGGGCAAAGATCTTACACGTGTTTGCCTTCCTGTATTCTTTAATGAGCCAATTTCGTCCCTTCAGAAATGTTTTGAGGATTTAGAGTACTCTTATCTTCTGGATAGAGCTTATGAGCATGGAAAAAAGGGAAACAGTCTCCTTCGAGCACTGAACGTTGCTGCCTTTGCTGTTTCTGGATATGCATCATCAGAAGGTCGTCATTGTAAGCCCTTTAATCCCTTGTTAGGGGAAACTTACGAGGCCGATTTTCCTGACAAAGGAGTTCGTTTCTTTTCCGAGAAGGTTAGTCACCATCCAACTGTGGTTGCCTGCCATTGTGAAGGTAGAGGATGGAGGTTTTGGGCAGACAGTAATATCCATTCAAAGTTTTGGGGAAGGTCAATTCAGCTTGATCCAGTTGGAGTTCTGACCCTTGAATTTGATGATGGGGAAATATTTCAGTGGAGCAAGGTTACGACTACAATTTATAATCTTATACTTGGAAAACTATATTGTGATCATCATGGGAATATGGAAATTCGTGGTAATCGCCAATATTCATGCAGGCTCAAGTTCAAAGAGCAGACGATTCTTGACCGAAATCCTCGCCAGGTAAATGGATTTGTTGAAGATACAATGGGAAAAAAAGCAGCCACATTATTTGGCAAGTGGGATGACAGCATATATTATTTTGATGGTGATGTGAATGTCAAGCATAAAGATTACACTTCGTCAAATGGAACCTTATTGTGGAAAAGGACTAAGCCACCACCAAATTTGACTCGGTACAATTTGACATCATTTGCCATCACATTGAATGAGCTTACACCAGGACTAAAGGAGAAGCTTCCGCCCACGGATTCCAGGCTGAGACCTGATCAGCGGCATTTAGAGAATGGGGAATACGAGAAGGCTAATATGGAGAAACAAAGGTTGGAAAAGAGGCAAAGAATGTCAAGGAAAATGCAAGAAAATGGTTGGGAACCTAGGTGGTTTCGCAAAGAAGGAGAAAAAGGAACGTTTCGATATACTGGCGGGTATTGGGAAGCGAGAGCTGTAGGAACATGGGATGGATGCCCAAATATATTTGGTGAATTTCAAGAAAGCATAACTGATACTTTTGATGCCTCTTGA	2313	0.4137	MRVKEMHPLCCISLESPGIGSHSPEPDAAALARTRSLPASGSDRISRRGSEATVAGVLYKWTNYGKGWRSRWFLLRNGVLSYAKIRWPENLNLFSSIDDVRLIGDVTANRLARMDRDAGNAVRRKNHKPSSSSSSSPSVVHLKISSFRESKSDDRKFYIFTATKTLHLRTDSRKDRVAWIQALVSTRSLYPLSGHHLSLLPYHISVSTERLKKRLIEEGSSENLVKECEQIMLAEFSELQEQLKILCQERSSLFDTIRQLEAANIEPEGSALHDSEYQLTKNGFSSLGRGKYSECSTTESSDDIEKQELEEVSEEDEISYYDSRDYFTEPSFSCGSKGTLDQVKMSGEAVRQCIDMENSHVETMIYDDYGFPQVSRRTKLPDPVEKEKGVSLWSMIKDNVGKDLTRVCLPVFFNEPISSLQKCFEDLEYSYLLDRAYEHGKKGNSLLRALNVAAFAVSGYASSEGRHCKPFNPLLGETYEADFPDKGVRFFSEKVSHHPTVVACHCEGRGWRFWADSNIHSKFWGRSIQLDPVGVLTLEFDDGEIFQWSKVTTTIYNLILGKLYCDHHGNMEIRGNRQYSCRLKFKEQTILDRNPRQVNGFVEDTMGKKAATLFGKWDDSIYYFDGDVNVKHKDYTSSNGTLLWKRTKPPPNLTRYNLTSFAITLNELTPGLKEKLPPTDSRLRPDQRHLENGEYEKANMEKQRLEKRQRMSRKMQENGWEPRWFRKEGEKGTFRYTGGYWEARAVGTWDGCPNIFGEFQESITDTFDAS	770

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu04g02408	770	PANTHER	BNAC03G64980D PROTEIN	369	761	-	-
	Tsu04g02408	770	SMART	PH_update	52	190	IPR001849	-
	Tsu04g02408	770	MobiDBLite	consensus disorder prediction	677	692	-	-
	Tsu04g02408	770	ProSiteProfiles	PH domain profile.	51	188	IPR001849	-
	Tsu04g02408	770	Gene3D	-	477	649	-	-
	Tsu04g02408	770	PANTHER	OXYSTEROL-BINDING PROTEIN-RELATED	369	761	IPR000648	GO:0008289
	Tsu04g02408	770	PANTHER	OXYSTEROL-BINDING PROTEIN-RELATED	4	115	IPR000648	GO:0008289
	Tsu04g02408	770	PANTHER	OXYSTEROL-BINDING PROTEIN-RELATED	131	341	IPR000648	GO:0008289
	Tsu04g02408	770	Pfam	Pleckstrin homology domain	56	183	-	-
	Tsu04g02408	770	MobiDBLite	consensus disorder prediction	672	692	-	-
	Tsu04g02408	770	SUPERFAMILY	Oxysterol-binding protein-like	386	765	IPR037239	-
	Tsu04g02408	770	Gene3D	-	48	189	IPR011993	-
	Tsu04g02408	770	SUPERFAMILY	PH domain-like	50	185	-	-
	Tsu04g02408	770	Coils	Coil	688	717	-	-
	Tsu04g02408	770	Pfam	Oxysterol-binding protein	391	744	IPR000648	GO:0008289
	Tsu04g02408	770	Gene3D	-	687	744	-	-
	Tsu04g02408	770	PANTHER	BNAC03G64980D PROTEIN	4	115	-	-
	Tsu04g02408	770	PANTHER	BNAC03G64980D PROTEIN	131	341	-	-
	Tsu04g02408	770	MobiDBLite	consensus disorder prediction	117	138	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu04g02408	Tsu-Chr4	27046392	27057158	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu04g02408	K20456		-	gmx:100812205	1311.59

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu04g02408	04	27046392	27057158	Tsu04g02408	04	27046392	27057158	ECH