Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02405 ATGGCTTCAAAAACCTCTTCCTCCCTTGCAATTTTCCTCACAATCAACATTCTCTTCTTTACACTTGTCTCTTCTTGCGGGACATGCGGCTCTGGCCCATACCCTAACCCTAACCCAAAGCCAAAACACACACCAAGCCCAAAACATCATGGTGGTTCGAGCCATTCAGGTGGAGGATCAAGCCATTCAGGTGGGGGCTCTAGCCCTTCAGGAGGCTCAAGCCCCTCTGGAGGCTACACTCCACCTGGTGGCTCTAGTCCATCAGGCGGCAGTGGAACCACCACATGCCCACGCGATGCACTCAAACTCGGCGTATGTGCCAATGTTCTAAGCGGATTGTTGAATGTAACTTTGGGCCAGCCACCAGTGACACCATGCTGCTCACTCCTAAATGGTCTTGTTGATCTTGAGGCTGCAGTGTGTCTTTGCACTGCCCTTAGAGCTAACATTTTGGGGATAAATCTTAACCTTCCTATCTCACTTAGCTTGCTTCTCAATGTTTGCTCAAGGCAAGCACCACGTGATTTCCAATGCTCCTAA 540 0.5019 MASKTSSSLAIFLTINILFFTLVSSCGTCGSGPYPNPNPKPKHTPSPKHHGGSSHSGGGSSHSGGGSSPSGGSSPSGGYTPPGGSSPSGGSGTTTCPRDALKLGVCANVLSGLLNVTLGQPPVTPCCSLLNGLVDLEAAVCLCTALRANILGINLNLPISLSLLLNVCSRQAPRDFQCS 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02405 179 Gene3D - 94 179 IPR036312 -
Tsu04g02405 179 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Tsu04g02405 179 Pfam Hydrophobic seed protein 95 179 IPR027923 -
Tsu04g02405 179 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 98 178 IPR036312 -
Tsu04g02405 179 SMART aai_6 96 178 IPR016140 -
Tsu04g02405 179 MobiDBLite consensus disorder prediction 50 95 - -
Tsu04g02405 179 PANTHER - 7 51 - -
Tsu04g02405 179 PANTHER - 81 179 - -
Tsu04g02405 179 MobiDBLite consensus disorder prediction 34 95 - -
Tsu04g02405 179 CDD HPS_like 96 178 IPR027923 -
Tsu04g02405 179 PANTHER 14 KDA PROLINE-RICH PROTEIN DC2.15 7 51 - -
Tsu04g02405 179 PANTHER 14 KDA PROLINE-RICH PROTEIN DC2.15 81 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02405 Tsu-Chr4 26985105 26985985 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02405 85 178 Acyl Lipid Metabolism Gene Families AT4G22490 40.426 2.92e-15 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02405 - - gmx:100798361 182.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02405 04 26985105 26985985 Tsu04g02405 04 26985105 26985985 ECH