Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02402 ATGGCTTCCAAAACTTATTCAACTCTTGCTATTTTCCTCATAATCAACATTCTCTTTTTTTCACTTGTTTCAGCTTGTGGTTCTCAAAAATGCAAGCCTCCAAAGCCAAAACCCACCCCAACTCCTTCAAGTGGCTCATGCCCACGTGATACACTCAAATTTGGTGTATGTGCCAATGTTCTAAGTGGGTTGTTGAATATAACAATTGGTCTACCACCAGTGACCCCTTGTTGTTCCCTCCTAGATGGCCTTGTTGATCTTGAGGCTGCAGCATGTCTTTGCACTGCCCTTAAAGCTGACATTTTGGGCATACATCTTAACCTTCCAATTTCACTTAGCTTGCTACTCAATGTTTGCTCAAGGAAAGTCCCACATGATTTTCAATGTGCCTAA 393 0.4198 MASKTYSTLAIFLIINILFFSLVSACGSQKCKPPKPKPTPTPSSGSCPRDTLKFGVCANVLSGLLNITIGLPPVTPCCSLLDGLVDLEAAACLCTALKADILGIHLNLPISLSLLLNVCSRKVPHDFQCA 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02402 130 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Tsu04g02402 130 PANTHER 14 KDA PROLINE-RICH PROTEIN DC2.15 8 130 - -
Tsu04g02402 130 Gene3D - 45 130 IPR036312 -
Tsu04g02402 130 CDD HPS_like 45 129 IPR027923 -
Tsu04g02402 130 PANTHER - 8 130 - -
Tsu04g02402 130 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 49 129 IPR036312 -
Tsu04g02402 130 SMART aai_6 47 129 IPR016140 -
Tsu04g02402 130 Pfam Hydrophobic seed protein 47 130 IPR027923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02402 Tsu-Chr4 26948271 26948663 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02402 38 129 Acyl Lipid Metabolism Gene Families AT4G22490 40.217 3.24e-17 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02402 - - gmx:100804198 178.718
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02402 04 26948271 26948663 Tsu04g02402 04 26948271 26948663 ECH