Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02399 ATGTTATCATCAAAAGCAAAagctttgtttttcatttttaaaatattgatctTGAATGTCATAACACATGCATATGCATGTGGTCCATGCATTCAACCAAATCCACCACCTTATCACAACAAACCACCAAGCCATCCAAAACATCCACCGCATCACCACCACGGCGGAGGAAAACAGCCAGTAATATCTCCTCCGCCTGTGGTTGTGGTGCCGCCGATTATCGTTACACCACCACTTCAACCACCGCCGACGATCATATATCCACCACCAACAACCCCTACTCCTGTTTTTCCTCCACCAATTACTCAACCAACTTGTCCAATTGATGCACTCAAACTAGGGCTGTGTTTGGATGTGCTTGGAGGACTTGTTCATGTTGTAATTGGTAACCCTGTTAAGAATGTGTGTTGTCCTGTTATTCAAGGGTTGGTTGATCTTGAAGCTGCAATTTGTCTTTGTACTGTTATTAGGGCTAAGGTTCTTAATCTTAATATTTATCTTCCTCTTGCTCTTCAAGTTTTGGCTACTTGTGGAAAGACTCCTCCTCGTGATTTTGTTTGTCCACCTCTCTAA 573 0.4119 MLSSKAKALFFIFKILILNVITHAYACGPCIQPNPPPYHNKPPSHPKHPPHHHHGGGKQPVISPPPVVVVPPIIVTPPLQPPPTIIYPPPTTPTPVFPPPITQPTCPIDALKLGLCLDVLGGLVHVVIGNPVKNVCCPVIQGLVDLEAAICLCTVIRAKVLNLNIYLPLALQVLATCGKTPPRDFVCPPL 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02399 190 Pfam Hydrophobic seed protein 105 188 IPR027923 -
Tsu04g02399 190 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 108 189 IPR036312 -
Tsu04g02399 190 SMART aai_6 106 187 IPR016140 -
Tsu04g02399 190 CDD HPS_like 104 187 IPR027923 -
Tsu04g02399 190 Gene3D - 101 189 IPR036312 -
Tsu04g02399 190 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 4 189 - -
Tsu04g02399 190 MobiDBLite consensus disorder prediction 37 59 - -
Tsu04g02399 190 PANTHER - 4 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02399 Tsu-Chr4 26930070 26930642 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02399 105 189 Acyl Lipid Metabolism Gene Families AT4G22490 34.118 2.66e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02399 - - gmx:100807391 164.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02399 04 26930070 26930642 Tsu04g02399 04 26930070 26930642 ECH