Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02383 ATGGGAACTCGATCAAATTTGTACAAGAACCCTTCAATCACCTACAACAAACACTTCAGTCTCTCTTCCGTTCTTCAGAATCTCCACGCTTACAACATCGCCACCGGCAATGTTACTTCCGACGAACAACCGCCTCCTGCTCCCACCGCCTCCCGCAAACGTCGCCGTCCTCTCCATCCACCGCAATCTCGTCAAAATCACCATAAGAATGAAGTTGACGATGATCCTTCTTCTATGTCCCACTACGATTACATTCTAAAGAGAAGGAAAGAAGTTGATTCGTCTAAGAATGCTGAACGCATTCAATTGACTGAAGATGTATTGGGAAACCCTAATTCTGCTATCTCCTTGGTAGATTATGCAAGTGATGAAAGTGCTTCTTCAGAGTGTGAAGAAGAAACTCATACTGATATTCTTCCAAATTCTGGTCCCAAAGAAGAATTTAATGGAGTTAAAAGTAGAAATGAGCAGCGTTTTCCTGTATCGGGGGAACCTGTTTGTCTTATATGTGGAAGATACGGTGAATATATATGCAACGAGACGGGTGACGATGTCTGTAGCATGGAGTGCAAAAATGAACTTTTGGAAATTTTTAAACTCAACGAGGGATCCTCCCATGACCAAGCTAAAGATTTCCCCTCATCTGGAATTAGTTATGCCTTACCAGCTCCTGTCTTTAGTGATGATACCTGGGATTGTAATCGGCATCGCTGGTCAAAAAAGAGATCTAGTCTTTCTACTTATGAATGTTGGAAATGTCAAAGACCTGGGCACTTAGCAGAAGATTGTCTAGTAAAGAGTAGCAATGAGatcaCTGTGGGAAGAAGTAATAGATCTAGCTCCATTCCAAAGGATCTTCTTGGACTGTATAGAAGGTGCCACCAGCTTGGTAAAGACTTGTTGGCTGCAAACTGTAATACATGCCGCAGCTCATCGAATTTGGCCACATGCATCGATTGTAGTATTGTTCTTTGTGATGGGGCAGGTCACTTGAATGATCATATAAGAACACACCCTTCCCATCAAAAATATTACTCACACAAGCTAAAACGTCTGGTTAAATGCTGCAAGTCAACTTGCAAGGTCACTGACATCAAGGATCTATTGGTTTGTCACTATTGCTTTGATAAAGCCTTTGAAAAGTTCTATGACATGTATACTGCAACATGGAAAGGAGCTGGGTTTTCGATTATATGTGGTTCTATATGCTGTGAAGATCACTTCACGTGGCACAGGATGAATTGTTTGAATGCAGGTGCGGAAGAAAGTGCATATATTGTAAACAGCAATGGCCATGAAGGCAAACGTACACAACTTAgtgatttcattttttga 1335 0.412 MGTRSNLYKNPSITYNKHFSLSSVLQNLHAYNIATGNVTSDEQPPPAPTASRKRRRPLHPPQSRQNHHKNEVDDDPSSMSHYDYILKRRKEVDSSKNAERIQLTEDVLGNPNSAISLVDYASDESASSECEEETHTDILPNSGPKEEFNGVKSRNEQRFPVSGEPVCLICGRYGEYICNETGDDVCSMECKNELLEIFKLNEGSSHDQAKDFPSSGISYALPAPVFSDDTWDCNRHRWSKKRSSLSTYECWKCQRPGHLAEDCLVKSSNEITVGRSNRSSSIPKDLLGLYRRCHQLGKDLLAANCNTCRSSSNLATCIDCSIVLCDGAGHLNDHIRTHPSHQKYYSHKLKRLVKCCKSTCKVTDIKDLLVCHYCFDKAFEKFYDMYTATWKGAGFSIICGSICCEDHFTWHRMNCLNAGAEESAYIVNSNGHEGKRTQLSDFIF 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02383 444 Pfam HIT zinc finger 165 191 IPR007529 -
Tsu04g02383 444 MobiDBLite consensus disorder prediction 64 79 - -
Tsu04g02383 444 MobiDBLite consensus disorder prediction 133 153 - -
Tsu04g02383 444 SUPERFAMILY Retrovirus zinc finger-like domains 234 263 IPR036875 GO:0003676|GO:0008270
Tsu04g02383 444 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 444 - -
Tsu04g02383 444 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN ISOFORM 4 1 444 - -
Tsu04g02383 444 Gene3D - 148 205 - -
Tsu04g02383 444 Gene3D - 243 297 - -
Tsu04g02383 444 ProSiteProfiles Zinc finger CCHC-type profile. 250 263 IPR001878 GO:0003676|GO:0008270
Tsu04g02383 444 MobiDBLite consensus disorder prediction 35 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02383 Tsu-Chr4 26646382 26654248 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02383 - - gmx:100814892 674.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02383 04 26646382 26654248 Tsu04g02383 04 26646382 26654248 ECH