Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02317 ATGGAGGTTGCAACCGCAAACGCAGCGTTTACCTTCGCAGTTAACAAGCCTATGTTCGTTTCACCATCTTCATCACGAACCATAAATTCTATCAGAGCCACAAAATCCACTTTAAGAAACTCAATCTCAACCGATTTCGTCGCTCCTTCCACCGCAATCAGCTCTTCCTCTAGTACTTTCTCCGGTCACAAGCTCCAACCTCCGTGCCTCAATCCGGCATCGTTTCAAAGCTCCGGCGGTAAAAGAAGCGTTGTTACTATGGTTATTCCTTTTACAAGAGGGAATGCACGGGAGCAACCTCCACCAGACTTAGCTTCTTACTTGTTAAGAAATCGAATTATTTACCTAGGCATGCCTCTTGTTCCATCCGTCACAGAGTTGATGGTTGCTGAATTTCTCTACCTTCAATATGACGATGTAACAAAACCCATTTATATGTACATAAACTCCACGGGGACAACCAAGGGAGATCAGAAGTTGGGTTTTGAGACTGAAGCACTTGCAGTTTATGATTTAATGAGGTATGTGAAACCTCCTATTTTTACTCTCTGTGTTGGCAATGCTTGGGGAGAGGCGGCCTTACTTTTGGCTGCTGGTGCAAAGGGTAACCGTTCTGCCTTGCCATCATCAACAATAATGATAAGAGAGCCAATTGCACGGTTTCAAGGTCAAGCAACAGATGTCAAGATTGCAAGCAAAGAAATCACTACATTGAAGACACAATTGGTTAATTTGTTAGCAAAGCACACTGAAAAAACACCTGAGCAGATTATAGCTGATACTCGGCGTCCAAAGTACTTTAGTCCTACTGAAGCTGTTGAGTATGGAATCATAGACAAGGTGATTTACAATGAAAAGGGCGCTAAGGATCGTGGCGTTGTTTCTGACCTTAAAAAGGCACAGCTTATTTGA 912 0.432 MEVATANAAFTFAVNKPMFVSPSSSRTINSIRATKSTLRNSISTDFVAPSTAISSSSSTFSGHKLQPPCLNPASFQSSGGKRSVVTMVIPFTRGNAREQPPPDLASYLLRNRIIYLGMPLVPSVTELMVAEFLYLQYDDVTKPIYMYINSTGTTKGDQKLGFETEALAVYDLMRYVKPPIFTLCVGNAWGEAALLLAAGAKGNRSALPSSTIMIREPIARFQGQATDVKIASKEITTLKTQLVNLLAKHTEKTPEQIIADTRRPKYFSPTEAVEYGIIDKVIYNEKGAKDRGVVSDLKKAQLI 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02317 303 SUPERFAMILY ClpP/crotonase 97 285 IPR029045 -
Tsu04g02317 303 Pfam Clp protease 103 284 IPR023562 -
Tsu04g02317 303 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 13 302 - -
Tsu04g02317 303 PRINTS Clp protease catalytic subunit P signature 260 279 IPR001907 GO:0004176|GO:0004252|GO:0006508
Tsu04g02317 303 PRINTS Clp protease catalytic subunit P signature 143 163 IPR001907 GO:0004176|GO:0004252|GO:0006508
Tsu04g02317 303 PRINTS Clp protease catalytic subunit P signature 103 118 IPR001907 GO:0004176|GO:0004252|GO:0006508
Tsu04g02317 303 PRINTS Clp protease catalytic subunit P signature 203 222 IPR001907 GO:0004176|GO:0004252|GO:0006508
Tsu04g02317 303 PRINTS Clp protease catalytic subunit P signature 182 199 IPR001907 GO:0004176|GO:0004252|GO:0006508
Tsu04g02317 303 CDD S14_ClpP_2 103 281 IPR001907 GO:0004176|GO:0004252|GO:0006508
Tsu04g02317 303 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 13 302 IPR023562 -
Tsu04g02317 303 Gene3D - 74 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02317 Tsu-Chr4 25853865 25861881 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02317 K01358 - gmx:100780029 425.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02317 04 25853865 25861881 Tsu04g02317 04 25853865 25861881 ECH