Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02289 ATGGATCAGTTGTCGGCGATCAGCGAGGATCTGGCGGAGATCGACGGACGCGTCGCCGACAATTTCCGCGCTCTATCaaATGGATTCCAGAAGCTGGAGAAGATTAAGGAATCGAGTAGACAGAGCCGGCAATTGGAAGATCTCACGGAGAAAATGCGAGAGGCTAAAGGGCTTATTAAAGATTTTGATAAAGAAGTCAAAGCCTTGGAGGATCGTTTTGACAGTAAAACTACCAAATTTTTGAATGAGAAAAAGCAGTCAATGATCAAAGAGTTGAATTCATATGTTGCTTTAAAGAAACAGTATGCTTCAAATATTGAGAATAAGCGAATTGAACTCTTTGAGGGACCTAGTGAAGGTTACACAGAAGAAAATGTCTTGCTAGCTTCCGCAATGACAAATGAACAGCTAATGGATCAAGGGAATCGGATGATGGATGACACAGATCAAGCCATTGAAAGGGGGAAAAGGATTGTTCAAGACACAATAAATGTTGGTACTGAGACTGCAGCAGCTCTTAAGGCTCAGACGGAACAAATGAGCAGAGTTGTCAATGAGCTGGATTCTATCCATTTCTCTATGAAGAAAGCATCCAAACTGGTCAAGGAAATCGGTAGGCAGGTTGCTACTGACAAGTGTATTATGACATTACTTTTCCTTATCGTCATTGGAGTAATCGCAATCATTATTGTGAAGCTTGTGCATCCAGAAAACAAGGACATTCGCGACATTCCAGGATTAGCTCCTCCGGTCATGAACAATAGAAGATTGCTTTGGAATCACAGTTGA 789 0.4183 MDQLSAISEDLAEIDGRVADNFRALSNGFQKLEKIKESSRQSRQLEDLTEKMREAKGLIKDFDKEVKALEDRFDSKTTKFLNEKKQSMIKELNSYVALKKQYASNIENKRIELFEGPSEGYTEENVLLASAMTNEQLMDQGNRMMDDTDQAIERGKRIVQDTINVGTETAAALKAQTEQMSRVVNELDSIHFSMKKASKLVKEIGRQVATDKCIMTLLFLIVIGVIAIIIVKLVHPENKDIRDIPGLAPPVMNNRRLLWNHS 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02289 262 Gene3D - 133 212 - -
Tsu04g02289 262 Pfam Sec20 150 232 IPR005606 GO:0005484|GO:0006890
Tsu04g02289 262 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 142 204 IPR000727 -
Tsu04g02289 262 CDD SNARE_SNAP25N_23N_29N_SEC9N 139 203 IPR044766 GO:0005484|GO:0031201
Tsu04g02289 262 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 1 250 - -
Tsu04g02289 262 SUPERFAMILY SNARE fusion complex 132 205 - -
Tsu04g02289 262 Coils Coil 35 79 - -
Tsu04g02289 262 PANTHER NOVEL PLANT SNARE 11 1 250 - -
Tsu04g02289 262 SMART tSNARE_6 137 204 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02289 Tsu-Chr4 25565302 25573984 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02289 K08494 - gmx:100796579 435.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02289 04 25565302 25573984 Tsu04g02289 04 25565302 25573984 ECH