LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu04g02285	atgactTTAACACTTCGTTCTTCTATTTCTTTCATCATTCAGAAAGAAACCAAATTCCTTAAAACTTTTGATGATGTCTCTGCCACAGTCACCTTTGCAAAAATTAAGCCATCTTTTCGTCTTAAAGCCAAGAGTTCTATGCAAGTGGAACATACCTTAAACTCTGAAGGAACCATAAATGAGAAATGGGAGAAGCTGCATGCTCCATCAATTGTTCATAGTAACCATGATAATTCTAAGAGGGTGCCAGTGTTTGTGATGCTTCCATTGGACACAGTAACAATGGGAGGAAACTTGAATAAGCCTAGAGCAATGAGTGCTAGTTTGATGGCTTTGAAGAGTGCTGGAGTTGAAGGGGTTATGGTTGATGTTTGGTGGGGTTTGGTTGAAAAAGATGGACCTTTGAAGTATAACTGGGAAGCTTATGCTGAGCTTGTGCAGATGGTGCAAATGCATGGTTTGAAGCTTCAAGTTGTTATGTCTTTTCATCAGTGTGGAGGAAATGTTGGAGATTCCTGCAGTGTTCCTCTACCTCCATGGGTGATGGAAGAGATTAGCAAGAACCCAGACATAGTTTACACAGACAGATCAGGGAGGAGAAATCCTGAGTACATCTCATTGGGCTGTGATTCAGTGCCTGTTTTAAGAGGAAGAACTCCCATCCAAGTGTATGCTGACTATATGAGGAGCTTTCGTGACAGATTCAGAGATTACTTGGGCACTGTCATCTCGGAAATACAAGTAGGAATGGGTCCATGTGGGGAACTGAGATATCCATCATATCCAGAAAGCAATGGAACTTGGAGGTTTCCTGGAATTGGAGAATTCCAATGTTATGACAAGTATATGAAAGCATCCTTGGCAGCAGCAGCCGAGGCGATCGGAAAGAAGGAATGGGGAGGAGGTGGACCCCATGATTCCGGCCAGTATAATCAATTTCCTGAGGATACTGGGTTTTTCAGAAAAGATGGAACATGGAACTCTGAATATGGACAGTTCTTTATGGGATGGTACTCCGGTAAATTGTTGGAGCATGGTGAGAGGATCCTTTTATCAGCCAAAGAAATATTTCAATCATCTGGTGTGAAACTATCTGGTAAAATCGCTGGAATCCACTGGCATTACAAATCAAGGTCGCACGCAGCTGAACTAACTGCTGGCTACTATAATACTAGACATAATGATGGATATCTTCCAATAGCTAAAATGTTTGCAAACCATGATGTTGTCTTCAATTTCACCTGCATGGAAATGAAAGACAGAGAACAACCTGACCATGCTAACTGCTCACCAGAAGGGTTAGTTCACCAAGTAAAGACGGCAACGAGGACAGCTAGAATAGAACTTGCTGGCGAAAACGCACTCGAGAGATATGATGCAGGTGGATATGCTCAAGTTTTGTCAACAAGTATGTCCGACTCCGGCAGTGGATTGGCTGCATTTACATACTTGAGAATGaataaaaagttgtttgaaGGTGATAACTGGCGGCACCTAGTGGATTTTGTAAGAAACATGTCTGAAGGTGGTAGGGGACAGAGACTTCCAGATTCCGATTCACGTGGAAGTGATATTTATGTTGGGCACATCAAGAAAACTAAGGAGCACAAGCAAGAGGCTGGGACTGTTCTTGTGTGA	1638	0.4219	MTLTLRSSISFIIQKETKFLKTFDDVSATVTFAKIKPSFRLKAKSSMQVEHTLNSEGTINEKWEKLHAPSIVHSNHDNSKRVPVFVMLPLDTVTMGGNLNKPRAMSASLMALKSAGVEGVMVDVWWGLVEKDGPLKYNWEAYAELVQMVQMHGLKLQVVMSFHQCGGNVGDSCSVPLPPWVMEEISKNPDIVYTDRSGRRNPEYISLGCDSVPVLRGRTPIQVYADYMRSFRDRFRDYLGTVISEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMKASLAAAAEAIGKKEWGGGGPHDSGQYNQFPEDTGFFRKDGTWNSEYGQFFMGWYSGKLLEHGERILLSAKEIFQSSGVKLSGKIAGIHWHYKSRSHAAELTAGYYNTRHNDGYLPIAKMFANHDVVFNFTCMEMKDREQPDHANCSPEGLVHQVKTATRTARIELAGENALERYDAGGYAQVLSTSMSDSGSGLAAFTYLRMNKKLFEGDNWRHLVDFVRNMSEGGRGQRLPDSDSRGSDIYVGHIKKTKEHKQEAGTVLV	545

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu04g02285	545	PANTHER	BETA-AMYLASE 3, CHLOROPLASTIC	1	539	-	-
	Tsu04g02285	545	SUPERFAMILY	(Trans)glycosidases	80	509	IPR017853	-
	Tsu04g02285	545	Pfam	Glycosyl hydrolase family 14	85	502	IPR001554	GO:0000272\|GO:0016161
	Tsu04g02285	545	ProSitePatterns	Beta-amylase active site 1.	163	171	IPR018238	GO:0000272\|GO:0016161
	Tsu04g02285	545	PANTHER	-	1	539	IPR001554	GO:0000272\|GO:0016161
	Tsu04g02285	545	Gene3D	Glycosidases	74	541	-	-
	Tsu04g02285	545	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	116	130	IPR001554	GO:0000272\|GO:0016161
	Tsu04g02285	545	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	137	155	IPR001554	GO:0000272\|GO:0016161
	Tsu04g02285	545	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	159	180	IPR001554	GO:0000272\|GO:0016161
	Tsu04g02285	545	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	251	273	IPR001554	GO:0000272\|GO:0016161
	Tsu04g02285	545	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	326	345	IPR001554	GO:0000272\|GO:0016161
	Tsu04g02285	545	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	362	378	IPR001554	GO:0000272\|GO:0016161
	Tsu04g02285	545	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	379	390	IPR001554	GO:0000272\|GO:0016161
	Tsu04g02285	545	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	397	420	IPR001554	GO:0000272\|GO:0016161
	Tsu04g02285	545	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	434	456	IPR001554	GO:0000272\|GO:0016161

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu04g02285	Tsu-Chr4	25521280	25524459	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu04g02285	1	543	Glycoside Hydrolase	AT4G17090	72.727	0.0	843

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu04g02285	K01177		-	gmx:100818063	944.495

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu04g02285	04	25521280	25524459	Tsu04g02285	04	25521280	25524459	ECH