Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02277 ATGGCCGAATCGGTGGAACTTCCGACTCGCTTGGCGATCCTTCCCTTCAGAAACAAGGTTCTCTTACCTGGTGCTATCATCAGAATTCGTTGCACTTCCCCTAGCAGTGTGAAGTTGGTGGAACAAGAACTCTGGCAGAAAGAAGAGAAGGGGTTGATCGGCATCCTACCTGTGCGTGATGCTCTTGAAATTAAGTCGGCaggtactactactactacagCATCTCAAGGAACTGATATTCTAGACCAAAGCTCAAAACTTCAGGACGGTTCATCAGATTCTCTCAAGTCTGATACCAAAAAGCAGAATGACATTGTTCATTGGCACAACAGGGGGGTTGCTGCTCGACCATTACATTTATCAAGGGGAGTGGAGAAACCAAGTGGGAGGGTCACATACACAGTTGTTCTTGAGGGTTTGTGCAGATTTAGTGTCCTGGAACTAAGCACAAGAGGAATATACCATACTGCAAGGATATCTTCCCTTGAGATGACTAAAACTGAGATGGAACAAATAGAGCAAGACCGGGATTACTTAATGTTGTCTCGCCAATTCAAAGCAACAGCAATGGAGCTTATTTCTCTTTTGGAGCTGAAACAAAAAACTGGTGGAAGAACCAAAGTCCTTTTGGACAACGTTCCGGTTCACAAGTTGGCTGATATATTTGTTGCAAGTTTTGAGATAAGTTTTGAAGAACAACTATCTATGTTGGATTCAGTTGGCCCTAAAGTGAGGCTTTCAAAAGCAACGGAGTTAGTTGATAGACATTTACAGTCAATACGTGTAGCTGAGAAAATTACACAGAAGGTTGAAGGACAATTGTCAAAATCTCAAAAAGAATTTCTTCTGCGGCAGCAGatgAGGGCTATAAAAGAAGAACTTggtgataatgatgatgatgaagatgaccTGGTTGCCCTTGAAAGGAAGATGAAGAGTGCAGGAATGCCGCCAAATGTATGGAAACATGCACACAGAGAGTTGAGGAGGCTTAAAAAAATGCAGCCTCAGCAACCTGGGTATAACAGTTCCCGGGTTTACCTAGATCTTCTTGCCGATCTGCCCTGGCAGAAGGCCAGCGAAGAGATTGAACTGGACTTAAGAGCTGCACAAAAGCGACTGGACAGTGATCATTATGGTTTAGTGAAGGTCAAGCAAAGAATTATTGAATACCTGGCAGTTCGCAAGCTTAAACCAGATGCAAGGGGTCCAGTGTTGTGCTTTGTTGGGCCACCGGGTGTCGGGAAAACATCATTGGCATCTTCTATTGCTGCTGCTTTGGGAAGAAAGTTTATCCGCATATCCCTTGGCGGAGTCAAGGATGAGGCCGATATTAGAGGACATAGGAGAACATATGTTGGAAGCATGCCTGGACGGCTTATAGATGGATTAAAGAGAGTAGCTGTTTGCAATCCTGTTATGTTGCTTGATGAAGTTGACAAGACGGGTTCTGATGCTCGTGGAGATCCAGCTTCCGCATTGCTAGAGGTTCTTGATccagaacaaaataaaacattcaaTGATCACTATTTGAATGTCCCATTTGATCTGTCCAAGGTAATTTTCGTGGCTACAGCAAATAGGATGCAGCCTATTCCTCCACCGCTTCTAGATAGGATGGAAGTGATTGAGCTCCCTGGATATACACCTGAGGAAAAGCTTCAAATAGCCATGAAGCATTTGATTCCAAGAGTTTTGCTTCAACATGGTTTGAGTTCTGCGTTTATTCAGATTCCAGagGCGATGGTGAAACTTATCATTCAAAGATATACTAGGGAAGCTGGTGTGCGGAATTTGGAGAGGAATCTTGCTGCCCTGGCTCGTGCTGCTGCTGTAAGAGTTGTAGAGCAAGAACAAGTTGTTCCATTAAACAAAGGGATGAAAGGAATTTCTACTCCACTTCTGGAAAATAGACTTGCTGATGGAACTGAAGTTGAAATGGATCTGATGCCAATAAGTGTAAATAGCCAGGACATCGCAAACACATTCAGTGTTGCCTCTCTGTTGGTTGTTGATGAAACCATGCTTGAAAAAGTTCTCGGGCCTCCAAGATTTGATGATAGTGAAGCGGCAGAACGTGTGGCTTCCCCTGGGGTCTCTGTTGGGCTGGTTTGGACTGCTTTTGGCGGAGAAGTTCAGTTTGTGGAGGCTACAGAAATGGTAGGGAAGGGCGAACTGCATCTCACTGGACAACTTGGTGATGTAATCAAAGAATCAGCTCAGATTGCACTAACATGGGTAAGGGCAAGGGCAACTGATCTTAGGCTGGATGCTGCAAAGGGATTTAATCTTTTGGAGGGCCGCGATGTACATATTCATTTTCCTGCGGGTGCTGTTCCTAAAGATGGGCCCTCGGCAGGTGTAACTTTAGTCACGTCATTGGTATCACTTTTCACTCAGAAAAGCGTCAGATCAGATACAGCTATGACTGGAGAGATGACATTGAGGGGACTAGTTCTACCAGTTGGAGGTGTTAAGGATAAGATATTAGCAGCCCATCGTTATGGTATCAAGAGAGTTATCTTGCCTGAAAGGAACCTGAAAGACTTGGTTGAAGTACCATCATCAGTGCTGGCCAATTTGGAGATACTGCTTGCTAAACGAATGGAAGATGTGTTAGAGCATGCTTTTGACGGAGGGTGCCCATGGAGACAACACTCTAAGGATGCTTCCAATAATGACCCAAATTTGAGCTATGATTTTTGTGTTACATCCCTTAATGACGCTTGCAAGAACAAATCACAACCTACCAAACTTGAAGAACTTGTTAACATATCAATTCAATTCACCAAGTCCAATGGAACCAACATCATTTCCATAATTTCAAAGCAATTGCAAAATCAAACTCAAGATGAATATGTGAAATCTTGTTTACATGATTGTTTTGATCTTTACAATGATTCACTTTCATCTTTAAATGATGCTATGGTTGCTTTCAATAAATCAAAAGATTTAGACACGGCCGGTATAAATGTTAGCGCCGCCATGGATGATTCGGTTACATGTGAAGATCAATTCAAAGAaaggaaagagaaaaatgaaactTCTCCTTTAACAAAAGAGAATCATGTTTACTTTCAACTCAATGTTATATCTCTATCTTTCATTCAAATGATTCGTCAACATAACTAG 3132 0.4157 MAESVELPTRLAILPFRNKVLLPGAIIRIRCTSPSSVKLVEQELWQKEEKGLIGILPVRDALEIKSAGTTTTTASQGTDILDQSSKLQDGSSDSLKSDTKKQNDIVHWHNRGVAARPLHLSRGVEKPSGRVTYTVVLEGLCRFSVLELSTRGIYHTARISSLEMTKTEMEQIEQDRDYLMLSRQFKATAMELISLLELKQKTGGRTKVLLDNVPVHKLADIFVASFEISFEEQLSMLDSVGPKVRLSKATELVDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDNDDDEDDLVALERKMKSAGMPPNVWKHAHRELRRLKKMQPQQPGYNSSRVYLDLLADLPWQKASEEIELDLRAAQKRLDSDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAAALGRKFIRISLGGVKDEADIRGHRRTYVGSMPGRLIDGLKRVAVCNPVMLLDEVDKTGSDARGDPASALLEVLDPEQNKTFNDHYLNVPFDLSKVIFVATANRMQPIPPPLLDRMEVIELPGYTPEEKLQIAMKHLIPRVLLQHGLSSAFIQIPEAMVKLIIQRYTREAGVRNLERNLAALARAAAVRVVEQEQVVPLNKGMKGISTPLLENRLADGTEVEMDLMPISVNSQDIANTFSVASLLVVDETMLEKVLGPPRFDDSEAAERVASPGVSVGLVWTAFGGEVQFVEATEMVGKGELHLTGQLGDVIKESAQIALTWVRARATDLRLDAAKGFNLLEGRDVHIHFPAGAVPKDGPSAGVTLVTSLVSLFTQKSVRSDTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEVPSSVLANLEILLAKRMEDVLEHAFDGGCPWRQHSKDASNNDPNLSYDFCVTSLNDACKNKSQPTKLEELVNISIQFTKSNGTNIISIISKQLQNQTQDEYVKSCLHDCFDLYNDSLSSLNDAMVAFNKSKDLDTAGINVSAAMDDSVTCEDQFKERKEKNETSPLTKENHVYFQLNVISLSFIQMIRQHN 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02277 1043 Gene3D - 696 883 IPR014721 -
Tsu04g02277 1043 ProSiteProfiles Lon N-terminal domain profile. 11 255 IPR003111 -
Tsu04g02277 1043 Pfam ATP-dependent protease La (LON) substrate-binding domain 11 255 IPR003111 -
Tsu04g02277 1043 Pfam ATPase family associated with various cellular activities (AAA) 406 543 IPR003959 GO:0005524|GO:0016887
Tsu04g02277 1043 Coils Coil 290 310 - -
Tsu04g02277 1043 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 1 888 IPR027065 GO:0004176|GO:0004252|GO:0005524|GO:0030163
Tsu04g02277 1043 SMART AAA_5 402 547 IPR003593 -
Tsu04g02277 1043 SMART lon_5 10 255 IPR003111 -
Tsu04g02277 1043 SUPERFAMILY PUA domain-like 10 254 IPR015947 -
Tsu04g02277 1043 SMART PMEI_2 886 1035 IPR006501 GO:0004857
Tsu04g02277 1043 ProSiteProfiles Lon proteolytic domain profile. 694 879 IPR008269 GO:0004176|GO:0004252|GO:0006508
Tsu04g02277 1043 TIGRFAM lon: endopeptidase La 13 877 IPR004815 GO:0004176|GO:0005524|GO:0006508
Tsu04g02277 1043 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 620 IPR027417 -
Tsu04g02277 1043 ProSitePatterns ATP-dependent serine proteases, lon family, serine active site. 782 790 IPR008268 GO:0004176|GO:0004252|GO:0006508
Tsu04g02277 1043 Gene3D Invertase/pectin methylesterase inhibitor family protein 888 1039 IPR035513 -
Tsu04g02277 1043 Gene3D - 367 545 IPR027417 -
Tsu04g02277 1043 Gene3D - 1 162 IPR046336 -
Tsu04g02277 1043 MobiDBLite consensus disorder prediction 73 92 - -
Tsu04g02277 1043 CDD AAA 387 548 - -
Tsu04g02277 1043 Hamap Lon protease homolog 2, peroxisomal [LONP2]. 3 889 IPR027501 GO:0004252|GO:0006515
Tsu04g02277 1043 Pfam Plant invertase/pectin methylesterase inhibitor 898 1033 IPR006501 GO:0004857
Tsu04g02277 1043 Gene3D - 546 640 - -
Tsu04g02277 1043 PANTHER LON PROTEASE HOMOLOG 2, PEROXISOMAL 1 888 - -
Tsu04g02277 1043 SUPERFAMILY Ribosomal protein S5 domain 2-like 697 877 IPR020568 -
Tsu04g02277 1043 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 697 713 - -
Tsu04g02277 1043 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 809 828 - -
Tsu04g02277 1043 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 779 798 - -
Tsu04g02277 1043 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 410 429 - -
Tsu04g02277 1043 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 832 850 - -
Tsu04g02277 1043 Gene3D - 306 354 - -
Tsu04g02277 1043 Gene3D - 163 298 - -
Tsu04g02277 1043 CDD PMEI-Pla_a_1_like 888 1038 IPR034088 -
Tsu04g02277 1043 TIGRFAM PME_inhib: pectinesterase inhibitor domain 898 1039 IPR006501 GO:0004857
Tsu04g02277 1043 MobiDBLite consensus disorder prediction 73 101 - -
Tsu04g02277 1043 Pfam Lon protease (S16) C-terminal proteolytic domain 671 877 IPR008269 GO:0004176|GO:0004252|GO:0006508
Tsu04g02277 1043 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 897 1039 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02277 Tsu-Chr4 25391415 25405054 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02277 K01338 - gmx:100789982 1526.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02277 04 25391415 25405054 Tsu04g02277 04 25391415 25405054 ECH