Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g02256 ATGGCTACATCTCTTTCTTCTGTGATTCACATCACATTTCTTGACACCAAAACAACACAAAGAAGATTCATCATTCCTTCAAAATCTCACAGAAAATTTCTCACCAATTCTTCAAAACCCACTACTCCATCAGATTCACCTCTCACACCACCAATTTCCGACAACAAAAAAAACGCATCTTTATCCGACCAACTTGCTTCTCTTGCAAACACAACCTTATCCACTGTCCCAGAAAACCAACCCAAggttttatcaaaaccaaaacccacaTGGGTCAATCCCACTAAGGCTAAACGTCCTGTGTTGTCTCAGCAAAGACACAAACGTTTTTCTGTATCATATAGTCCACAGATGAGAGAGTTTCAACGTTTTGCTCAGAGATTGAACAATTGTGATTTGTCTTCTGAAGAAGAATTTATGTCTTGTTTGGAAGAAATTCCAACAACTTCATCACTTAGTAGAGAAAATGTTTTATTGGTGCTTAATAGTTTGAAACCATGGCAGAAGACTCATAAGTTTTTTAATTGGATTAAGACTAAGGATTTGATTCCTATGGAAACTATATTTTATAATGTTACAATGAAGTCTTTGAGATTTGGGAGACAGTTTGGGATTATTGAAGAACTTGCACACCAGATGATTGATAATGGGATTGAAATGGATAACATTACTTACTCAACTATTATAAGTTGTGCTAAGAAGTGTAATCTTTTTGATAAAGCTGTGCATTGGTTTGAGAAGATGTACAAGATGGGGTTGATGCCGGATGAGGTAACTTTTTCGGCTATTTTAGATGTTTATGCTAGGTTAGGTAAGGTTGAAGAGGTTGTTAATTTGTTTGAGAGAGGTAGGGCAACTGGGTGGAAGCCTGATCCGATTACATTTTCGGTGTTGGGGAAGATGTTTGGGGAGGCTGGTGATTATGATGGGATTAGATATGTTTTGCAGGAGATGAAATCTCTTGGAGTTCAGCCTAATTTAGTTGTGTATAACACTTTGTTGGAAGCAATGGGAAAGGCGGGGAAGCCGGGGTTTGCGAGGAGTTTGTTTGAAGAAATGATTGATTCGGGGATAGCTCCGAATGAGAAGACTTTAACTGCGGTAATTAAGATATATGGAAAGGCTAGGTGGTCTAAAGATGCTTTGGAATTGTGGAAACGAATGAAGGAAAACGGTTGGCCTATGGATTTTATGTTGTATAATACATTGTTGAATATGTGTGCAGATGTTGGATTACTTGAAGAAGCTGAAACTCTATTTAGAGATATGAAACAGTCTGAGTATTGCAAGCCGGATAGTTGGAGTTACACGGCTATGATAAACATATATGGGAGTGAAGGAGATGTGGCTAAGGCAATTAAATTGTTTGAAGAGATGTATAAATCGGGTATTGAACTCAATGTGATGGGGTGTACTTGTTTGATTCAGTGCTTAGGAAAGGCCATGGAAATTGATGCTTTGGTCAAAGTTTTCGACATTTATGTTGATAGAGGAGTTAAGCCAGATGATAGATTATGTGGTTGCTTGTTAtctgttgtgtctctttctcagGGTAGCAAGGATCAAGAAAAAGTCCTTGCTTGTTTGCAGCGAGCTAACCCAAAATTGGTTACCTTTATTCAACTAATTGCAGATGAGGAAACTAGTTTTGAGACTGTCAAGGAAGAGTTTAAGGCTATAATGAGTAATGCTGCGGTTGAGGTGAGAAGACCCTTCTGTAATTGCTTGATTGACATATGTAGAAACAAAGATCTCATTGAAAGAGCCCACGAGTTGCTCTACTTAGGGACTTTATATGGATTCTACCCAAGTTTGCACAACAAAACACAATATGAATGGTGTTTAGACGTTCGAACATTGTCGGTTGGGGCAGCTCTAACTGCACTTGAAGAGTGGATGAATACACTCGCCACAATTGTTAAGCGAGAGGAGGCATTACCGGACTTACTCCTAGCACAAACTGGTACCGGTGCTCATAAGTTTGCACATGGACTCAATATTTCTTTTGCCTCTCATTTGAGAAAATTGGCTGCTCCATTTAGGCAGAGCGAGGATAAAGTCGGTTGTTTTATTGCAACGAAAGAAGATTTAGTCTCCTGGGTGCAATCAAACTTACCGTCGGAATTCGTTGCAACATAA 2139 0.381 MATSLSSVIHITFLDTKTTQRRFIIPSKSHRKFLTNSSKPTTPSDSPLTPPISDNKKNASLSDQLASLANTTLSTVPENQPKVLSKPKPTWVNPTKAKRPVLSQQRHKRFSVSYSPQMREFQRFAQRLNNCDLSSEEEFMSCLEEIPTTSSLSRENVLLVLNSLKPWQKTHKFFNWIKTKDLIPMETIFYNVTMKSLRFGRQFGIIEELAHQMIDNGIEMDNITYSTIISCAKKCNLFDKAVHWFEKMYKMGLMPDEVTFSAILDVYARLGKVEEVVNLFERGRATGWKPDPITFSVLGKMFGEAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGFARSLFEEMIDSGIAPNEKTLTAVIKIYGKARWSKDALELWKRMKENGWPMDFMLYNTLLNMCADVGLLEEAETLFRDMKQSEYCKPDSWSYTAMINIYGSEGDVAKAIKLFEEMYKSGIELNVMGCTCLIQCLGKAMEIDALVKVFDIYVDRGVKPDDRLCGCLLSVVSLSQGSKDQEKVLACLQRANPKLVTFIQLIADEETSFETVKEEFKAIMSNAAVEVRRPFCNCLIDICRNKDLIERAHELLYLGTLYGFYPSLHNKTQYEWCLDVRTLSVGAALTALEEWMNTLATIVKREEALPDLLLAQTGTGAHKFAHGLNISFASHLRKLAAPFRQSEDKVGCFIATKEDLVSWVQSNLPSEFVAT 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g02256 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Tsu04g02256 712 MobiDBLite consensus disorder prediction 72 103 - -
Tsu04g02256 712 Pfam PPR repeat 293 323 IPR002885 -
Tsu04g02256 712 Pfam PPR repeat 400 426 IPR002885 -
Tsu04g02256 712 Gene3D Tetratricopeptide repeat domain 125 266 IPR011990 GO:0005515
Tsu04g02256 712 Gene3D Tetratricopeptide repeat domain 267 373 IPR011990 GO:0005515
Tsu04g02256 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 432 466 IPR002885 -
Tsu04g02256 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
Tsu04g02256 712 SUPERFAMILY HCP-like 238 464 - -
Tsu04g02256 712 PANTHER OS03G0856100 PROTEIN 28 704 - -
Tsu04g02256 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Tsu04g02256 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Tsu04g02256 712 Pfam PPR repeat family 222 268 IPR002885 -
Tsu04g02256 712 Pfam PPR repeat family 431 478 IPR002885 -
Tsu04g02256 712 Pfam PPR repeat family 325 370 IPR002885 -
Tsu04g02256 712 MobiDBLite consensus disorder prediction 30 58 - -
Tsu04g02256 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Tsu04g02256 712 TIGRFAM PPR: pentatricopeptide repeat domain 328 362 IPR002885 -
Tsu04g02256 712 TIGRFAM PPR: pentatricopeptide repeat domain 364 396 IPR002885 -
Tsu04g02256 712 TIGRFAM PPR: pentatricopeptide repeat domain 435 468 IPR002885 -
Tsu04g02256 712 TIGRFAM PPR: pentatricopeptide repeat domain 223 257 IPR002885 -
Tsu04g02256 712 TIGRFAM PPR: pentatricopeptide repeat domain 399 432 IPR002885 -
Tsu04g02256 712 TIGRFAM PPR: pentatricopeptide repeat domain 258 291 IPR002885 -
Tsu04g02256 712 TIGRFAM PPR: pentatricopeptide repeat domain 471 502 IPR002885 -
Tsu04g02256 712 Gene3D Tetratricopeptide repeat domain 374 568 IPR011990 GO:0005515
Tsu04g02256 712 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Tsu04g02256 712 PANTHER OS03G0856100 PROTEIN 28 704 - -
Tsu04g02256 712 ProSiteProfiles Smr domain profile. 615 698 IPR002625 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g02256 Tsu-Chr4 25137190 25139859 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g02256 190 543 Glycosyltransferase AT1G05670 25.348 5.78e-29 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g02256 - - gmx:100780994 1112.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g02256 04 25137190 25139859 Tsu04g02256 04 25137190 25139859 ECH