Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g01188 ATGGGTGAAACAAAGTTGAGTGGCTTGAAGGATAAAAGATGGTCTCTGCATGGTATGACTGCATTAGTGACCGGAGGAACTCGAGGCATTGGGTATGCAATTGTGGAAGAGTTAGCTGAATTTGGAGCAGCTGTGCATATATGTGCACGTAATGAAGATGACATTAATAAGTGTTTAAAAGAGTGGAAAAGCAAGGGCCTTAATGTAACAGGATCAGTATGTGATATACTCTTCCATGACCAACGTGAAAAATTAATGGAAACCGTTTCTTCTATTTTTCACGGAAAGCTCAATATTCTAGTAAACAATGCTGCAAAACCTACGATGaagataataatagaaaatactGATGAAGATATAACAACTACAATTGGTACCAATTTTGTGTCTGGTTACCATTTGTGTCAACTTGCACATCCACTTCTGAAAAATTCTGGATATGGAAGTGTAGTATTTACTTCGTCCGTTGCTGGTTTAAAAGCTATTCCCGTTTTATCTGTTTATGCAGCCACAAAAGGAGCGGTGAATCAATTCACAAAGAATTTAGCATTAGAATGGGCGAAGGATAATATTCGTGCAAATTCAGTGGCACCTGGTCCCGTCAAGACATCACTTTTGGAATCTGTCATGAATGAATCTAATGAAGGGGATGAAGCTATAGCTGGTATAGTGGCTGAAACACCTACGGGTCGTATGGGAGAGACTAAAGAGATATCAGCACTAGTTGCTTTTCTTTGTCTTCCAGCTGCATCACATATCACTGGACAAGTTATAGCTGTTGATGGAGGTTACACTTGTTAg 801 0.387 MGETKLSGLKDKRWSLHGMTALVTGGTRGIGYAIVEELAEFGAAVHICARNEDDINKCLKEWKSKGLNVTGSVCDILFHDQREKLMETVSSIFHGKLNILVNNAAKPTMKIIIENTDEDITTTIGTNFVSGYHLCQLAHPLLKNSGYGSVVFTSSVAGLKAIPVLSVYAATKGAVNQFTKNLALEWAKDNIRANSVAPGPVKTSLLESVMNESNEGDEAIAGIVAETPTGRMGETKEISALVAFLCLPAASHITGQVIAVDGGYTC 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g01188 266 Gene3D - 4 266 - -
Tsu04g01188 266 PANTHER ENOYL-(ACYL CARRIER) REDUCTASE 1 265 - -
Tsu04g01188 266 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 155 183 IPR020904 GO:0016491
Tsu04g01188 266 Pfam Enoyl-(Acyl carrier protein) reductase 27 265 - -
Tsu04g01188 266 PRINTS Glucose/ribitol dehydrogenase family signature 189 206 IPR002347 -
Tsu04g01188 266 PRINTS Glucose/ribitol dehydrogenase family signature 228 248 IPR002347 -
Tsu04g01188 266 PRINTS Glucose/ribitol dehydrogenase family signature 168 187 IPR002347 -
Tsu04g01188 266 PRINTS Glucose/ribitol dehydrogenase family signature 95 106 IPR002347 -
Tsu04g01188 266 PRINTS Glucose/ribitol dehydrogenase family signature 20 37 IPR002347 -
Tsu04g01188 266 PRINTS Glucose/ribitol dehydrogenase family signature 142 158 IPR002347 -
Tsu04g01188 266 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 18 265 IPR036291 -
Tsu04g01188 266 PANTHER TROPINONE REDUCTASE 1 265 IPR045000 GO:0016491
Tsu04g01188 266 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 156 IPR002347 -
Tsu04g01188 266 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 95 106 IPR002347 -
Tsu04g01188 266 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 187 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g01188 Tsu-Chr4 11794294 11797878 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g01188 11 265 Miscellaneous Gene Families AT2G29290 56.078 5.99e-100 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g01188 K08081 - gmx:100786456 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g01188 04 11794294 11797878 Tsu03g01726 03 17614912 17617847 ECH
Tsu04g01188 04 11794294 11797878 Tsu04g01188 04 11794294 11797878 ECH