Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00621 ATGTTGAAATCTAAGGAACCTCCTTTATGTTCATGTAAAAATCCATTATGGGTTGCAGCTTTTTTCTTCAAACAGCTTAAGAAAGCTCAAATCATGGATACTGACATTTCTTCTTCTGTAGACAAGATTATGCATTATGAAATGGACGCTGTTTCCTATAGAATACTTGCATATCTTCTTCTTGGTGTTGTCAAAACATACTCAAAGAAGGTTGAGTATCTACTCCATGATTGCAATAACATGATCAGCGGAATCAACAAATTTGTGATAAATACAAAGAACAATGCACCTGTGGAAGCCGTGTGTATGGCTTTTACTATGCCTGACACATTTGAGTTGGATGCTCTTGATGTTGGTGAACTTGAAGATACTTCTGGGTATCATACTGCCCCCCCAGAACAAATCACTCTTAAAGAAGTTTTGTCTAATACTGGAGGATTTGCGCAGTTTTCTCAAGAGAGGTTTGAGGATTTTGATATGCAGTTTGAGGGTTTAGATTTTGGCGAAACTAGCTGCTCTCTTGACCACATTATGGCGGAAAAcacttttcttcaatttcaagCGATGGACTTCGACTTCGAAGTTTTTCCATCAAATAGTCGAAATAATCTCATTGAAGGGTCTTCTGAAAAACAATTAAGCCGAAATAATCTCATTGAAGAGTCTTCTGAAAAACAATTAGAATTTCAAAAAAAGGTGTCGTTTGAAGATGGACAATCTAGCGCTAAACCGTCAGAGTCAACAACCATTAATGAAACTCCTCAATCTAAGTTTCATGATGATTCAATTGCAAGACCAAAACCAGGTGCTACGAAACCAGATTTTATGCTTATTCCTACTCCAGACGCAACAGAACGTGCACActtttcaaagaaaagaaaatttgttATTGATGAAATGACAACCTTGTCTAATACGATACTCAGAAAGCGCATACATGATGCAAGTGACGTAGTCTCTGTTCGAAAACCATTACACGTCGCTTTGATtgataaaaagagaaaaactcAGATGTTCAGTCTTCTGAATGGGTTCAATGAATCATTGTTTCCTTGTCACTCCCCAAAGCTTCAACGCTTGTTTTCTAACAGCAAATTGAAAATACCGGTCTCCCTTCAAATTGGGTCAGATGTGCAAGAATCTGAAGCGGTTGACATTCCGGAGCAAGAATCTGAAGCGGTTGACTTTCCGGTGCAAGAATCTGAAGCGGTTGACATTCCGGAGCATATCCAAATTACTCCGGAAATCCCTCCAAGCTGCCCTTCTCTTGGAAATGAAGAAATTCTCAGGGAGTTTGATGCTGTTGAATCTCAAGCATGCGGTAGCTCGGAGCATATAGCAACTGCTCCACAAACCCCTCCTTTAGGGCCTTCAAGTCCCCGTAGAAGTATAGAGAGGGGGCGACCTTCCGAAAGTAGTGATATTATGGCAGAAGAGGAAATAAATTCATGTGAAACTGAGAATTCAGAAATGTCTGGGTGGTCTGAGCAAACCAGTAAGGTTGCAACCTACTTGTGCAAACGAAAGGAGGCGGGTTCTATAAACCTTTCAAAAGTTTCAGAAGGACGAACCAGAAAAGAATCTGCAAGACTATTTTATGAAATACTGGTTTTGAAAACTACCAATTATGTGGATGTGCAACAAAAGGATGCTTATGGTGATATTGAAGTTAGGAAACTCCCCAAATTTGATAAAACTTTCGGCGTTTGA 1710 0.3842 MLKSKEPPLCSCKNPLWVAAFFFKQLKKAQIMDTDISSSVDKIMHYEMDAVSYRILAYLLLGVVKTYSKKVEYLLHDCNNMISGINKFVINTKNNAPVEAVCMAFTMPDTFELDALDVGELEDTSGYHTAPPEQITLKEVLSNTGGFAQFSQERFEDFDMQFEGLDFGETSCSLDHIMAENTFLQFQAMDFDFEVFPSNSRNNLIEGSSEKQLSRNNLIEESSEKQLEFQKKVSFEDGQSSAKPSESTTINETPQSKFHDDSIARPKPGATKPDFMLIPTPDATERAHFSKKRKFVIDEMTTLSNTILRKRIHDASDVVSVRKPLHVALIDKKRKTQMFSLLNGFNESLFPCHSPKLQRLFSNSKLKIPVSLQIGSDVQESEAVDIPEQESEAVDFPVQESEAVDIPEHIQITPEIPPSCPSLGNEEILREFDAVESQACGSSEHIATAPQTPPLGPSSPRRSIERGRPSESSDIMAEEEINSCETENSEMSGWSEQTSKVATYLCKRKEAGSINLSKVSEGRTRKESARLFYEILVLKTTNYVDVQQKDAYGDIEVRKLPKFDKTFGV 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00621 569 MobiDBLite consensus disorder prediction 440 477 - -
Tsu04g00621 569 PANTHER SISTER CHROMATID COHESION 1 PROTEIN 2 1 568 - -
Tsu04g00621 569 PANTHER SCC1 / RAD21 FAMILY MEMBER 1 568 IPR039781 GO:0007062|GO:0008278
Tsu04g00621 569 Pfam N terminus of Rad21 / Rec8 like protein 16 93 IPR006910 GO:0005515
Tsu04g00621 569 MobiDBLite consensus disorder prediction 233 278 - -
Tsu04g00621 569 MobiDBLite consensus disorder prediction 233 257 - -
Tsu04g00621 569 SUPERFAMILY "Winged helix" DNA-binding domain 510 563 IPR036390 -
Tsu04g00621 569 Pfam Conserved region of Rad21 / Rec8 like protein 511 563 IPR006909 -
Tsu04g00621 569 Gene3D Structural maintenance of chromosome 1. Chain E 476 567 IPR023093 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00621 Tsu-Chr4 5774094 5779024 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00621 K06670 - gmx:100810733 370.163