Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00620 ATGGCTTCCTCTACAAAAGATGATAATCCAAGATCTGTTAAAAGAGTTGCTGTTGTTGGTGCTGGGGTAAGTGGGCTTGCTGCGGCTTACAAATTGAAATCACATGGTCTAGATGTAACTGTTTTTGAAGCTGAAGGAAGAGCTGGAGGGAGGCTAAGAACTGTTTCTCGAGATGGGCTAATTTGGGATGAGGGGGCTAATACAATGACTGAAAGTGAAACAGAGGTTAAAGGTTTGATTGATGCTATTGGACTTCAAGTAAAACAACAATatCCACTGTCACAGCATAAGCGCTATATTGTAAAAAATGGGGAACCAGTTCTGGTACCCGCAAATCCTGCTGCACTACTGAAGAGCAAACTGCTTTCTGCACAATCAAAGATTCGGGTCATTTTTGAACCATTTATGTGGAAAGGAAATGACTCCTCTACCGTGCATGATGAAAATTCCGAAGAAAGTGTTAGCAGATTCTTCGAACGTCATTTTGGGAAAGAGGTTGTGGACTATCTCATTGATCCTTTTGTTGGAGGTACAAGTGCAGCAGATCCTGAATCTCTTTCTGCGCGCCATTCTTTCCCAGAGCTATGGAATTTGGAGAAAAGGTATGGCTCCATTATAGCAGGGGCTTTACAATCCAGCTTATTTGGCAAAAGGGACAAAACTGCAAAAACTAAAGATGGACCAAGAAAAAACAAGAACCAACGTGGTTCATTTTCTTTTCAGGGTGGGATGCAGACACTGACCGATACATTGTGCAAAGAGCTTGGCAATGATGACCTTAAATTAAATGCGAAGGTTTTGACACTAGCTTACAGTCATGATGGAAGTTCCCCATCGCAAAACTGGTCTATTACTTGTGCttctaacaaaaaaacacaagatgTTGATGCAGTAATTGTAACGGCTCCTCTTGATAATGTCAAAGACATCCGGATCACGAAAAGGGGAACCCCCTTTACACTTAATTTTCTTCCTGAGGTGACCTATTTACCACTCTCAGTCTTAATTACCACCTTTAAAAAGGAGAATGTAAAGAGACCTCTGGAGGGATTTGGAGTTCTTGTTCCTTCAAAAGAGGaacaaaatggttttaaaaCCCTTGGTACACTTTTTTCCTCTATGATGTTTCCAGATCGAGCACCCAGTGATATGCATCTCTATACCACCTTCATAGGAGGAACTCGGAACAGGGAACTCGCTCGAGCTTCAACTGACGAGCTTAAGAATATTGTCACTTCTGACCTGAGAAAGTTATTGGGAGCAGAGGGGGAGCCCACATTCGTCAACCATTTCTTCTGGAGTAAAGGCTTTCCTTTGTATGGTCATAACTATGGGTCAGTTCTTGAAGCAATTGACAAGATGGAAAAAGGTCTTCCTGGATTTTACTATGCAGGTAACCACAGAGGTGGACTCTCAGTTGGTAGAGCAATTGCCTCAGGTTGCAAAGCAGCTGATCTTGTAATTTCCTACCTCAACAATGCTTCAGACAAAACTGTGTCTGACAAATGA 1509 0.4135 MASSTKDDNPRSVKRVAVVGAGVSGLAAAYKLKSHGLDVTVFEAEGRAGGRLRTVSRDGLIWDEGANTMTESETEVKGLIDAIGLQVKQQYPLSQHKRYIVKNGEPVLVPANPAALLKSKLLSAQSKIRVIFEPFMWKGNDSSTVHDENSEESVSRFFERHFGKEVVDYLIDPFVGGTSAADPESLSARHSFPELWNLEKRYGSIIAGALQSSLFGKRDKTAKTKDGPRKNKNQRGSFSFQGGMQTLTDTLCKELGNDDLKLNAKVLTLAYSHDGSSPSQNWSITCASNKKTQDVDAVIVTAPLDNVKDIRITKRGTPFTLNFLPEVTYLPLSVLITTFKKENVKRPLEGFGVLVPSKEEQNGFKTLGTLFSSMMFPDRAPSDMHLYTTFIGGTRNRELARASTDELKNIVTSDLRKLLGAEGEPTFVNHFFWSKGFPLYGHNYGSVLEAIDKMEKGLPGFYYAGNHRGGLSVGRAIASGCKAADLVISYLNNASDKTVSDK 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00620 502 Pfam Flavin containing amine oxidoreductase 23 488 IPR002937 GO:0016491
Tsu04g00620 502 MobiDBLite consensus disorder prediction 218 232 - -
Tsu04g00620 502 SUPERFAMILY FAD/NAD(P)-binding domain 14 491 IPR036188 -
Tsu04g00620 502 Gene3D - 15 484 IPR036188 -
Tsu04g00620 502 PRINTS Adrenodoxin reductase family signature 38 51 - -
Tsu04g00620 502 PRINTS Adrenodoxin reductase family signature 15 37 - -
Tsu04g00620 502 PANTHER PROTOPORPHYRINOGEN OXIDASE 12 492 - -
Tsu04g00620 502 TIGRFAM proto_IX_ox: protoporphyrinogen oxidase 14 492 IPR004572 GO:0004729|GO:0006779
Tsu04g00620 502 SUPERFAMILY FAD-linked reductases, C-terminal domain 329 438 - -
Tsu04g00620 502 Gene3D protoporphyrinogen ix oxidase, domain 3 109 222 - -
Tsu04g00620 502 Gene3D Protoporphyrinogen oxidase, mitochondrial; domain 2 51 440 - -
Tsu04g00620 502 MobiDBLite consensus disorder prediction 217 241 - -
Tsu04g00620 502 PANTHER PROTOPORPHYRINOGEN OXIDASE 12 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00620 Tsu-Chr4 5757159 5767497 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00620 K00231 - gmx:547941 837.41