Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00613 ATGGGAGTGTCACCTAAAATTGCACCTTCGATGCTATCATCGGATTTCGCTAATTTGGCTTCTGAAGCTCATCGTATGATCAACTACGGCGCTGATTGGCTTCACATGGACATCATGGATGGGCATTTTGTCCCTAATTTAACTATGGGTGCTCCGATCATTGAAAGTTTGAGAAAGCACACAAAGGCATATCTGGACTGTCACCTGATGGTTACAAATCCTCTTGACTATGTTGAACCTTTGGGAAAAGCTGGTGCTTCTGGTTTTACATTTCATATAGAGACATCAAAAGACAACTGGAAAGAACTTATCCAAAATATTAAGTCACACGGCATGAAGCCTGGTGTAGCGATTAAGCCTGGGACATCAGTTGAAGAGGTTTATCCTCTGGTTGAATTTGAAAATCCTGTGGAAATGGTTCTTGTCATGACTGTAGAACCTGGATTTGGAGGACAAAAATTTATGCCAGAGATGATGGACAAGGTACGGACACTGAGGAAGAAGTATCCATCACTTGACATAGAGGTTGATGGTGGTTTAGGCCCTTCAACCATAGACGCAGCTGCATCAGCGGGAGCAAATTGTATTGTTGCTGGAAGTTCGGTGTTTGGAGCACCTGAGCCAGCTCAAGTAATATCATTACTGAGGAATTCTGTCGAGAAATCACAGTAA 672 0.4286 MGVSPKIAPSMLSSDFANLASEAHRMINYGADWLHMDIMDGHFVPNLTMGAPIIESLRKHTKAYLDCHLMVTNPLDYVEPLGKAGASGFTFHIETSKDNWKELIQNIKSHGMKPGVAIKPGTSVEEVYPLVEFENPVEMVLVMTVEPGFGGQKFMPEMMDKVRTLRKKYPSLDIEVDGGLGPSTIDAAASAGANCIVAGSSVFGAPEPAQVISLLRNSVEKSQ 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00613 223 PIRSF RPE 1 223 IPR026019 GO:0004750|GO:0006098
Tsu04g00613 223 PANTHER RIBULOSE-PHOSPHATE 3-EPIMERASE 1 222 - -
Tsu04g00613 223 Pfam Ribulose-phosphate 3 epimerase family 6 203 IPR000056 GO:0005975|GO:0016857
Tsu04g00613 223 Gene3D Aldolase class I 2 223 IPR013785 -
Tsu04g00613 223 SUPERFAMILY Ribulose-phoshate binding barrel 4 220 IPR011060 -
Tsu04g00613 223 CDD RPE 6 216 IPR000056 GO:0005975|GO:0016857
Tsu04g00613 223 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 1. 34 48 IPR000056 GO:0005975|GO:0016857
Tsu04g00613 223 Hamap Ribulose-phosphate 3-epimerase [rpe]. 4 218 IPR026019 GO:0004750|GO:0006098
Tsu04g00613 223 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 140 162 IPR000056 GO:0005975|GO:0016857
Tsu04g00613 223 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 1 222 IPR000056 GO:0005975|GO:0016857
Tsu04g00613 223 TIGRFAM rpe: ribulose-phosphate 3-epimerase 6 216 IPR026019 GO:0004750|GO:0006098
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00613 Tsu-Chr4 5707505 5711410 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00613 K01783 - gmx:100500085 415.616