Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00611 ATGACCATGGTTCTGAAATTTCTTAAAGTCGTCTCCATGCAGTCAATTTATCGTGCTGTTGTTCGTGATCCCTCTTGCATATTTTGTCTGCCTCTTGCATCTAGaactttgttttcttctttagCAACTTGTCACGATGCAGAAGGTAGAGACTTTCGACATCGAGAACAATCTCAAGACCTGACAAGATCTGTAGACATTCTTACTGCAAAAATTGGCAAAGGAAACAGCGAGGAAGATATTCTCCAGACTCTAATCAGCGATGAAACTGTAAGTGGTATTCATCTGTCTCAAAACCTTATTAACAGGTTGCTATGTCGATATAAGGATGATTGGAAGTCTGCATTGGGGATATTCAAATGGGCTAGTTTACATTCAAACTTTAAACATTCGCAAGAATCGTATGATATGATGGTAGATATATTGGGTAGAATGAAGGTAAtagaaaaaatgagagagatcTTAGAAGAAATGCGTCAGGAGAGTCTCATTACTCTCGATACTATAGCCAAGGTAATGAGAAGGTTTGCCGGTGCAAGACAGTGGAAAGATGCTGTGAGAGTATTTGATGACTTACAGATTTTCGGCTTGGAGAAGAATACGGAATCCGTGAATGTGTTGCTTGATACTCTATGCAAAGAGAAATTTGTTGAGCAAGCTCGTGAAATTTACGTGGAGCTGAAGCCTTACATTGCTCCAAACGCTCACACGTTTAACATATTAATTCATGGATGGTGCAAAATCCGACGTGTTGAGGAGGCACATTGGACAATCCAAGAGATGAAAGGGTATGGTTGTCGCCCTTGTGTTATAAGTTATTCCACCATCATCCAATGTTATTGTCAAGAACAGAATTTCGACAGGGTTTATGAGCTTCTTGATGAAATGCAAGCTCAAAATTGTTCCCCCAATGTGGTTACTTATACTATTATCATGTGTGCGCTGGCAAAAGCAGAAAAAATCGACGAAGCTTTTCAACTAGCTGAGAGAATGAACTCTACTGGATGTAAGCCTGATACACTTTTTTACAATTCGTTCATTTATGCGTTGGGGAGAGCAGGCAGAATAGACAATGCTATGCATGTTTTCAAGGTTGCGATGCCGAAGGTCGGTGTGGCCCCAAATACGTCAACATATAATTCAATGATTTCTATGTTTTGTTTCTATGCACATGAAGAGAGAGCTTTTGGCATACTGAAGGAGATGGAAGATTCAGGTCTATGTAAGCCTGATATTCAGACTTATCACCCATTGATCAAATCATGCTTTAGAATGCAAAAAATAGATTGTATGTTGAATGATATATTAAATGACATGGTAAAGAAGTATCATATTGGTCTTGATCTTTCAACCTATACACTACTAATTCACGGGCTTTGTAGAGCAGATAGATGTAAGTGGGCGTTCGTTCTGTTCGAGGAGATGGTTGATCAAGATATCGTGCCTAGATACCGAACTTGCCGTTTGCTCTTGGATGAAGTcaataagaaaaatatgtatGAAGCTGCtgagaaaattgaaattcttaTGAAGAAACTTTAA 1542 0.3761 MTMVLKFLKVVSMQSIYRAVVRDPSCIFCLPLASRTLFSSLATCHDAEGRDFRHREQSQDLTRSVDILTAKIGKGNSEEDILQTLISDETVSGIHLSQNLINRLLCRYKDDWKSALGIFKWASLHSNFKHSQESYDMMVDILGRMKVIEKMREILEEMRQESLITLDTIAKVMRRFAGARQWKDAVRVFDDLQIFGLEKNTESVNVLLDTLCKEKFVEQAREIYVELKPYIAPNAHTFNILIHGWCKIRRVEEAHWTIQEMKGYGCRPCVISYSTIIQCYCQEQNFDRVYELLDEMQAQNCSPNVVTYTIIMCALAKAEKIDEAFQLAERMNSTGCKPDTLFYNSFIYALGRAGRIDNAMHVFKVAMPKVGVAPNTSTYNSMISMFCFYAHEERAFGILKEMEDSGLCKPDIQTYHPLIKSCFRMQKIDCMLNDILNDMVKKYHIGLDLSTYTLLIHGLCRADRCKWAFVLFEEMVDQDIVPRYRTCRLLLDEVNKKNMYEAAEKIEILMKKL 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00611 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
Tsu04g00611 513 Gene3D Tetratricopeptide repeat domain 230 330 IPR011990 GO:0005515
Tsu04g00611 513 TIGRFAM PPR: pentatricopeptide repeat domain 134 162 IPR002885 -
Tsu04g00611 513 TIGRFAM PPR: pentatricopeptide repeat domain 451 482 IPR002885 -
Tsu04g00611 513 TIGRFAM PPR: pentatricopeptide repeat domain 236 268 IPR002885 -
Tsu04g00611 513 TIGRFAM PPR: pentatricopeptide repeat domain 271 305 IPR002885 -
Tsu04g00611 513 TIGRFAM PPR: pentatricopeptide repeat domain 343 375 IPR002885 -
Tsu04g00611 513 TIGRFAM PPR: pentatricopeptide repeat domain 306 340 IPR002885 -
Tsu04g00611 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Tsu04g00611 513 Pfam PPR repeat family 374 423 IPR002885 -
Tsu04g00611 513 Pfam PPR repeat family 268 317 IPR002885 -
Tsu04g00611 513 Pfam PPR repeat 448 476 IPR002885 -
Tsu04g00611 513 Pfam PPR repeat 232 255 IPR002885 -
Tsu04g00611 513 Pfam PPR repeat 335 364 IPR002885 -
Tsu04g00611 513 Pfam PPR repeat 134 161 IPR002885 -
Tsu04g00611 513 Pfam PPR repeat 203 228 IPR002885 -
Tsu04g00611 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 448 482 IPR002885 -
Tsu04g00611 513 Gene3D Tetratricopeptide repeat domain 331 405 IPR011990 GO:0005515
Tsu04g00611 513 Gene3D Tetratricopeptide repeat domain 406 513 IPR011990 GO:0005515
Tsu04g00611 513 Gene3D Tetratricopeptide repeat domain 76 229 IPR011990 GO:0005515
Tsu04g00611 513 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 38 513 - -
Tsu04g00611 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 374 IPR002885 -
Tsu04g00611 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Tsu04g00611 513 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Tsu04g00611 513 PANTHER OS02G0601600 PROTEIN 38 513 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00611 Tsu-Chr4 5694512 5698381 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00611 172 513 Miscellaneous Gene Families AT4G11690 22.807 1.20e-20 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00611 - - cam:101498834 769.229