Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00598 ATGACTAATACAAAAGCATTAGCAGTTCCAAATTTTGGTAGTGATTTTTGCATTAGTTACCATAATTCTCTATCACAGAAGATGAGAATTACTGAATTTTTACCACCCTCCGACGGCAATGgttcttcaaaagaaaaagaagaaccTATTCCTCAGGATGCAGATTATGTTCTAAGTCTCAGCGACGAGCTAGAGACTTCAATCTTGGTGAGATTTCCAAGATCATTACACTGGAAACTATGTTTTCTAAACAAGAGATTCTTGTCTCTAATGAAAAGCGGCGAGATATACAAAATAAGGAAGGAGTTAGGACTCAAAGAACCGTCGGTTTTCATGTTAGCTAGCGGGGAAAGCAATTGGTGGGGTATGGATTGGCCTTTCAAATCAAGCAGGAAGCTTCCAAGGATTCAATCAGATTACAGCTTTGAATTTGGTGATAAAGAGTCATTCTCTGCAGGGTCACATTTATTGGTTTCGGGCAAAGAAATGGACGGAGCTGTTATTTGGAGGTACGATTCGGAAACTAATGAATGGTTTAAAGGGCCATTCATGATTAATCCAAGATGTCTATTTGCTTCGGCTAGTTCTGGTAATTTCGCTTTCGTTGCTGGCGGATTAGAAACAAACACTTATAGGGAAATATTGGATACTGCTGAGAAATATGATTcgaaaaacaaaacttggacACCGTTACCGAAGATGAATTTAAAGAGAAAATTTTGTTCTGGTTGTTACATGGATAAGAGATTCTATGTCATTGGTGGGCAAGACGAGAATAAAAAGGACTTAACTTGCGGAGAGTATTTCGATGAAATGACCAATACATGGAACTTGATTCCTGATATGTTGAAAGATATTCCGCTCTCGGTTTCACTTTCAATTTCGCAGTCTCCGCCTCTAATAGCTGTTGTTAATAATGAGCTTTACACACTCGATGCGTCTTCTAACGAGTTGAAAGTTTACATCAAAGGGATGAATAAGTGGAAGAAGTTAGGCGTTGTTCCGGTTAGAGCCGATGAACAAGGTGGTTGGGGAGTTGCATTTAAATCACTTGGTGATCAGTTACTTGTTATTGGCGCGCCTTCGGTTTCGCATAAAGAACGCGCTCTGGCAATTTATACTTGTTGTCCTGATCCTGAAGGTGAGAGATTGAAATGGAAGCAAATTGATTGTGGGAGTGTTCAGCTTAATCATTTCATTAGGAACTGTGCTGTTATGATGGGAAGTTCTTGA 1233 0.3812 MTNTKALAVPNFGSDFCISYHNSLSQKMRITEFLPPSDGNGSSKEKEEPIPQDADYVLSLSDELETSILVRFPRSLHWKLCFLNKRFLSLMKSGEIYKIRKELGLKEPSVFMLASGESNWWGMDWPFKSSRKLPRIQSDYSFEFGDKESFSAGSHLLVSGKEMDGAVIWRYDSETNEWFKGPFMINPRCLFASASSGNFAFVAGGLETNTYREILDTAEKYDSKNKTWTPLPKMNLKRKFCSGCYMDKRFYVIGGQDENKKDLTCGEYFDEMTNTWNLIPDMLKDIPLSVSLSISQSPPLIAVVNNELYTLDASSNELKVYIKGMNKWKKLGVVPVRADEQGGWGVAFKSLGDQLLVIGAPSVSHKERALAIYTCCPDPEGERLKWKQIDCGSVQLNHFIRNCAVMMGSS 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00598 410 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 1 407 - -
Tsu04g00598 410 SUPERFAMILY Kelch motif 151 361 IPR015915 GO:0005515
Tsu04g00598 410 SMART kelc_smart 201 248 IPR006652 GO:0005515
Tsu04g00598 410 SMART kelc_smart 155 198 IPR006652 GO:0005515
Tsu04g00598 410 SMART kelc_smart 249 296 IPR006652 GO:0005515
Tsu04g00598 410 Gene3D - 113 390 IPR015915 GO:0005515
Tsu04g00598 410 Pfam Kelch motif 187 235 IPR006652 GO:0005515
Tsu04g00598 410 Pfam Kelch motif 238 282 IPR006652 GO:0005515
Tsu04g00598 410 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 1 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00598 Tsu-Chr4 5604050 5606513 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00598 58 279 Miscellaneous Gene Families AT4G33900 25.991 9.91e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00598 - - gmx:100783477 637.491