Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00594 ATGTTGCCGCCAAAACTACAATCCTTCCTCAAACATGGCACCGCCACCGCCAACCCCACCACCCTGTCAACAATAACACGGTGGCTGCAAACAACCTCACCACCTCTTTCATTCCCATCCCAAAAACAAAACCCACCTACCCTAACCTTCCTCGCCGACAATTCCACCACCATAGAACACCTCAAACAAGTCCACGCCCAAATGATCATTTCTTCCCACATCAACGACGAATTCGCCGCAAGCCGTTTATTCTCTTCATTTGCACTTTCCCCTTTCGGTAACCTCGATCACGCTACTAGAATATTCTCTTCCATACATAAACCCAATTCATTCATGTGGAATACTCTCATCCGCGCTCAACAACAACCCCACAAATCTCTCTCCCTTTACATCTCAATGCGTAGACTTGGTGTCTTACCAGGTAAGCACACTTTCCCTTTTCTCCTCAAAGCTTGTTCTTCACTCTCGAATCCTTTGTTAACTTGTAAACAAGTTCATTCACATGTGGTTAAATTTGGGTTGTGTTTTGATTGTCATGTGGCTAATGGTTTAGTGCGTGGTTATTGTGTTTCTGGTGATTTGGTTGATGCCCGTTACGTGTTTGATGAAATTCCGATGAAAATTTTGAGTCTTTGGACCACGATGATTTGTGGGTATGCTCAGAATTTTTGTTATAATGAGGCTTTAGAGCTTTTTGAGGGGATGATTGTTGAAGGGTTTGAGCCTAATGGTGCTACTTTGGCTTCGGTTTTGTCTGCTTGTGCTCGGTCGGGTAGTCTTGAGCTTGGGGAAAGGATACATGAGTTTATGAAAGTGAAAGGGGTTGAAGTGGGAGTGATACTTCGGACGGCGTTGGTTTATTTGTATGCGAAGAATGGGGTGATTTTGATGGCGAGGAagttgtttgatgaaatgcctGAGAGGAATGTTGTTACTTGGAATGCTATGATATGTGGTTTGGCTTCTCATGGGCATGTTGAAGATGCTCTTAGTTTATTTGAGAGTATGAAGAAGGAAGGGATTGTTGTTCCTAATGGTGTCACATTTGTTGGGGTTTTAAATGCTTGTTGTCATGCAGGTTTGATTGATGTTGGTCGCGAGGTTTTTTGTTCGATGAAAGTTGTGTATGGAATTGAACCGAAGATTGAGCATTATGGGTGCATGGTTGATCTTCTTGGGAGAGGAGGTAAGTTGTTGGAGGCAGAGGAAATGATAAAAAGGATGCCATGGAAACCTGACGTGGTTATGTTGGGATCTTTGCTGGCAGCTAGCAAGAATAATGGAAACACCGAGGTTGCTGAAAGAGTGGGGAAAGAAATTCTTAATCTGGAACCTCACAATCATGGAGTTCATGTTGCTTTGTCGAATATGTATGCAGAGGCTGGACTGTGGCAGGAAGTTTCGAAactgaggaagatgatgaaagAAGAGAAACTCAAGAAGGATCCAGGGTGGAGCCTTGTTGCAGCTTAA 1473 0.4257 MLPPKLQSFLKHGTATANPTTLSTITRWLQTTSPPLSFPSQKQNPPTLTFLADNSTTIEHLKQVHAQMIISSHINDEFAASRLFSSFALSPFGNLDHATRIFSSIHKPNSFMWNTLIRAQQQPHKSLSLYISMRRLGVLPGKHTFPFLLKACSSLSNPLLTCKQVHSHVVKFGLCFDCHVANGLVRGYCVSGDLVDARYVFDEIPMKILSLWTTMICGYAQNFCYNEALELFEGMIVEGFEPNGATLASVLSACARSGSLELGERIHEFMKVKGVEVGVILRTALVYLYAKNGVILMARKLFDEMPERNVVTWNAMICGLASHGHVEDALSLFESMKKEGIVVPNGVTFVGVLNACCHAGLIDVGREVFCSMKVVYGIEPKIEHYGCMVDLLGRGGKLLEAEEMIKRMPWKPDVVMLGSLLAASKNNGNTEVAERVGKEILNLEPHNHGVHVALSNMYAEAGLWQEVSKLRKMMKEEKLKKDPGWSLVAA 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00594 490 Pfam PPR repeat 384 409 IPR002885 -
Tsu04g00594 490 Pfam PPR repeat 182 204 IPR002885 -
Tsu04g00594 490 Pfam PPR repeat 249 275 IPR002885 -
Tsu04g00594 490 Pfam PPR repeat 211 240 IPR002885 -
Tsu04g00594 490 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 39 489 - -
Tsu04g00594 490 Pfam PPR repeat family 308 358 IPR002885 -
Tsu04g00594 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Tsu04g00594 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 277 IPR002885 -
Tsu04g00594 490 Gene3D Tetratricopeptide repeat domain 54 159 IPR011990 GO:0005515
Tsu04g00594 490 TIGRFAM PPR: pentatricopeptide repeat domain 311 344 IPR002885 -
Tsu04g00594 490 TIGRFAM PPR: pentatricopeptide repeat domain 347 380 IPR002885 -
Tsu04g00594 490 TIGRFAM PPR: pentatricopeptide repeat domain 211 243 IPR002885 -
Tsu04g00594 490 TIGRFAM PPR: pentatricopeptide repeat domain 182 204 IPR002885 -
Tsu04g00594 490 Pfam E motif 429 488 IPR046848 -
Tsu04g00594 490 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 208 242 IPR002885 -
Tsu04g00594 490 Gene3D Tetratricopeptide repeat domain 239 346 IPR011990 GO:0005515
Tsu04g00594 490 Gene3D Tetratricopeptide repeat domain 347 484 IPR011990 GO:0005515
Tsu04g00594 490 PANTHER OS11G0483950 PROTEIN 39 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00594 Tsu-Chr4 5558379 5559851 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu04g00594 62 488 Glycoside Hydrolase AT3G49170 34.411 5.02e-72 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00594 - - mtr:MTR_7g033400 807.749