Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu04g00527 ATGCCTGAAGAAGAATTGGTAGAGTTGAAGTTCCGTTTATACGATGGATCGGATATTGGACCGTTTCGTTACTCACCAACTTCAACTGTTTCTATGCTCAAGGAAAGGATTTTCTCTGAATGGCCAAAAgACAAGAAAATTATACCGAAGGCAGCAAATGATATAAAACTCATAAATGCTGGCAAAATTTTGGAGAACAACAAGACGGTTGGTCAGTGTAAAGTACCTTTTGGCGAACTTAAGGGTGTTATAACCATGCATGTTGTCGTTCAGCCATCTTTGGCAAAATCAAAAACAGAGAAAAAACTAGATGACACACCCAGAAAACATTTTTGTGGGTGTTCAATTTTGTGA 354 0.3785 MPEEELVELKFRLYDGSDIGPFRYSPTSTVSMLKERIFSEWPKDKKIIPKAANDIKLINAGKILENNKTVGQCKVPFGELKGVITMHVVVQPSLAKSKTEKKLDDTPRKHFCGCSIL 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu04g00527 117 CDD Ubl_MUBs_plant 6 92 - -
Tsu04g00527 117 Pfam Ubiquitin-2 like Rad60 SUMO-like 6 115 IPR039540 -
Tsu04g00527 117 PIRSF MUB 1 117 IPR017000 -
Tsu04g00527 117 ProSiteProfiles Ubiquitin domain profile. 7 75 IPR000626 GO:0005515
Tsu04g00527 117 PANTHER MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 4 1 117 - -
Tsu04g00527 117 PANTHER UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEIN 1 117 IPR040015 -
Tsu04g00527 117 Gene3D - 1 99 - -
Tsu04g00527 117 SUPERFAMILY Ubiquitin-like 2 96 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu04g00527 Tsu-Chr4 4895353 4900856 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu04g00527 - - mnt:21389118 211.46