Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03281 ATGAATCGCCAAAAATCCATTCTCTCATTCTTCCACAAATCCACACCGGAAAATCGCACTTCCGGCGCCGCACAATCCTCTATTCCGTCCTTTCAGCAAGCCGACCGTAATATCAAGACAGTTGTCAATCCACCACCGCCGGCAGATGACGTCAGAGGAACAGACACGCCACCGGAGAAAGTACCGCGTAAGGTTTTACCGGCGAACTTCGCGTCGAACACGAACAACTCCGGATCGTCTCTGTTTGAAAGCATCATGCATAAATTTATCAAGGTCGATGATGGCGAAACAGTTAACCAGAGGAGCCAGTCATCAAATCATGATAGCTTCTCCAAACCATCTCCATCATCATCTATATTTACTGATACTAACCGGAAAGGACTGCAGAAAGAAGAAGCAGCAGCTTTTAAACCTGTGGTGAAAGCGAAAGACAATGttgaaaattttaaagaaaaggTTAACCATGAAAAGGAAAAGGTTAACCATGAAAATATGTTCCTGgttgaaaatgatgatgatgttactGGACCAGAAACCCCAGGGATGCAGCCTCTTACTTCTAGTGTAAAGCGAAGTCGAGAGGATGGAACCAAGCTTTCTTCCTTGCGGGATTCTGGCAAACGAGTCAGATTTCTTGACGATTCATTGGCACTAGACATGACTAAGAAGGAGTTAGAGGTCGCTAGCAAGTTTGAGTGGCTTGATCCTTCTCGAATAAGGGATGCAAATGGAAGGAGGCCCAATGATCCTTTATATGACAGGACAACACTTTATATACCTCCAGAGGTTATGAGGAAAATGACAGCATCACAGAAACAGTACTGGAGTGTTAAATGCAAATATATCGATGTTGTGCTATTCTTTAAAGTGGGAAAATTTTATGAGCTTTATGAAATGGATGCTGAAATTGGCCATAAGGAGCTTGATTGGAAAATAACATTAAGTGGTGTGGGAAAATGTCGGCAGGTTGGTATATCTGAAAGTGGGATTGATGATGCTGTTAAAAACCTGGTTGCTCGTGGATATAAGGTTGGGCGAGTGGAGCAACTGGAGACATCTGGAGAAGCAAAAGCAAGAGGAGCTAATTCTGTTATTCTAAGAAAATTAGTTCAGGTAGTCACCCCATCTACCAATGTGGATGGTAATATTGGCCCTGATGCAAACCATCTTCTTGCAATAAAAGAGGAAAGCAATGGCTCGGATAATGGTTCAGTGACATATGGATTTGCTTTTGTTGATTGTGCCCGTCTTAGGTTATGGGTGGGTTCTATTGATGATGATGCGTCCTGTTCTGCTTTGGGGGCTTTATTGATGCAAGTGTCACCGAAGGAAATTATATATGATAGCAGAGGGGTGTCTAAAGAAGCTCAGAAAGCATTTAGAAAATTTTCTTTAAATGGTTCCACAACACTACAATTGACTCCTATGCGGTCGATCACCGACTTGGTGAACTCAGAAATTAGAGATTTAATTCACTCAAAGGGATACTTCAAGGGGTCATCTAATTCACTGGATCATGTGCTGAACAATCGTGAAATTACTTTGTCTGCTCTTGGTGGACTGATAGGTCATCTAAATAGATTGATgCTAGATGAGATCCTACAGAATGGGGACATATATCCGTACCAGGTTTATAAGGGTTGCCTCAAAATGGATGGTCCAACTTATATAAATCTAGAAATCTTTGGCAATAGTGACGATGGTGGTAAATCAGGTACATTGTACAAGTATCTTGATAACTGCGTTACTTCATCTGGAAAGAGGCTTCTTAGGAACTGGATTTGCTGTCCACTGAAAGATGCTGAAGGAATTAATAATAGGCTTGATGTGGTAGATCAGCTAATAGCTTCCCCTGAAATTGTGTCTCATATTGCACAACATCTTCGCAAGCTTCCAGATTTGGAACTATTAATTGGCCGTACAAAGTCCAGCCTCAAAGTATCAAGCCCGATTTTACTGCCCTTGTTGGTAAAGAAAACATTGAAACAAAGGGTGAAAGTGTTTGGGTCACTTGTGAAAGGCCTTCGGACTACTTTGAGTTTGTTGCTTCTACTACAGAAAGAGCAGCCTCTAATATCATCCttgaccaaagtttttaaacttCCAGTTCTGACTGGCAGTGACGGGCTCGATCAATTTCTTACTCAGTTTGAAGCAGCTGTAGATAGTGACTTCCCAAATTTCCAAAATCATGATGTTACAGATACAGATGCCGAAACACTCACAATACTTGCTGAATTATTTTTGGAGAAAGCTTCTCAATGGTTTGAAGTTGTTCATGCAATCAATTGCATTGACGTACTAAGATCTTTTGCTGTTACTTCTAGCTTTTCATGTGGAACTATGTCTAGGCCTGTCATAGTGCCAACATCACAAAGTACAAATAAAGATAATGGAGCTCCTGTGCTCAAAATGAAGGGGCTATGGCATCCATTTGCCCTTGGAGAGACCGGTCGTGAGCCCGTTCCTAATGATATGATCCTTGGTGAGAATGAAGACGGGCACCATCCTCGCACTTTGCTTCTGACTGGCCCAAACATGGGTGGAAAATCAACACTTTTACGTGCTACATGTCTAGCCGTTATCATGGCCCAGTTAGGCTGCTATGTGCCGTGCGAAAATTGTGTTCTCTCAGTTGTGGATATCATCTTCACACGGCTTGGAGCCACAGATAGAATCATGGCAGGCGAGAgtACCTTCTTTATTGAGTGTACAGAAACTGCATCGGTGCTTCAGAATGCTACTCAAGATTCTCTTGTTATCCTTGATGAATTGGGTCGGGGAACAAGCACTTTTGATGGCTATGCCATTGCATATGCTGTATTCCGACATCTGATTGAAAAGGTTAACTGTCGCTTGCTATTCGCAACACATTACCATCCACTAACAAAAGAATTCGCCTCTCATCCTCGTGTTACAATGCAACACATGGCCTGTGCTTTCAAGTCAAAATCTGATACTTTTTCCAAACAAGATCAGGAGCTCGTATTCCTATATCGTCTTGCCTCTGGAGCATGTCCCGAAAGCTACGGATTACAGGTTGCACTAATGGCTGGAATCCCAGAAAAAACTGTAAACATTGCTTCAAAGGCAAGCCAACAGATGAAAAAATCAATTGGAAAAAACTTCAGGTCAAGTGAACAGAGATCAGAGTTTTCAACTCTTCATGAAGAATGGTTGAAGACATTGATGTCTATGGCACAAATAGGGGATTGTGAATcttttgatgatgatgttatggATACATTAGTCTGTTTGCAGTATGAACTGAAAACTTCGTTTAAATCGGGCAAATAG 3297 0.4101 MNRQKSILSFFHKSTPENRTSGAAQSSIPSFQQADRNIKTVVNPPPPADDVRGTDTPPEKVPRKVLPANFASNTNNSGSSLFESIMHKFIKVDDGETVNQRSQSSNHDSFSKPSPSSSIFTDTNRKGLQKEEAAAFKPVVKAKDNVENFKEKVNHEKEKVNHENMFLVENDDDVTGPETPGMQPLTSSVKRSREDGTKLSSLRDSGKRVRFLDDSLALDMTKKELEVASKFEWLDPSRIRDANGRRPNDPLYDRTTLYIPPEVMRKMTASQKQYWSVKCKYIDVVLFFKVGKFYELYEMDAEIGHKELDWKITLSGVGKCRQVGISESGIDDAVKNLVARGYKVGRVEQLETSGEAKARGANSVILRKLVQVVTPSTNVDGNIGPDANHLLAIKEESNGSDNGSVTYGFAFVDCARLRLWVGSIDDDASCSALGALLMQVSPKEIIYDSRGVSKEAQKAFRKFSLNGSTTLQLTPMRSITDLVNSEIRDLIHSKGYFKGSSNSLDHVLNNREITLSALGGLIGHLNRLMLDEILQNGDIYPYQVYKGCLKMDGPTYINLEIFGNSDDGGKSGTLYKYLDNCVTSSGKRLLRNWICCPLKDAEGINNRLDVVDQLIASPEIVSHIAQHLRKLPDLELLIGRTKSSLKVSSPILLPLLVKKTLKQRVKVFGSLVKGLRTTLSLLLLLQKEQPLISSLTKVFKLPVLTGSDGLDQFLTQFEAAVDSDFPNFQNHDVTDTDAETLTILAELFLEKASQWFEVVHAINCIDVLRSFAVTSSFSCGTMSRPVIVPTSQSTNKDNGAPVLKMKGLWHPFALGETGREPVPNDMILGENEDGHHPRTLLLTGPNMGGKSTLLRATCLAVIMAQLGCYVPCENCVLSVVDIIFTRLGATDRIMAGESTFFIECTETASVLQNATQDSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCRLLFATHYHPLTKEFASHPRVTMQHMACAFKSKSDTFSKQDQELVFLYRLASGACPESYGLQVALMAGIPEKTVNIASKASQQMKKSIGKNFRSSEQRSEFSTLHEEWLKTLMSMAQIGDCESFDDDVMDTLVCLQYELKTSFKSGK 1098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03281 1098 MobiDBLite consensus disorder prediction 96 124 - -
Tsu03g03281 1098 PIRSF Msh6 729 1081 IPR017261 GO:0006298|GO:0030983
Tsu03g03281 1098 PIRSF Msh6 56 733 IPR017261 GO:0006298|GO:0030983
Tsu03g03281 1098 PIRSF Msh6 1 224 IPR017261 GO:0006298|GO:0030983
Tsu03g03281 1098 CDD ABC_MSH6_euk 804 1028 - -
Tsu03g03281 1098 Gene3D DNA repair protein MutS, domain I 226 386 IPR016151 GO:0005524|GO:0006298|GO:0030983
Tsu03g03281 1098 SMART mutATP5 837 1033 IPR000432 GO:0005524|GO:0006298|GO:0030983
Tsu03g03281 1098 SUPERFAMILY DNA repair protein MutS, domain I 256 377 IPR016151 GO:0005524|GO:0006298|GO:0030983
Tsu03g03281 1098 Pfam MutS domain III 555 772 IPR007696 GO:0005524|GO:0006298|GO:0030983
Tsu03g03281 1098 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 252 1090 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Tsu03g03281 1098 SUPERFAMILY DNA repair protein MutS, domain II 386 564 IPR036678 GO:0005524|GO:0006298|GO:0030983
Tsu03g03281 1098 Pfam MutS domain V 841 1035 IPR000432 GO:0005524|GO:0006298|GO:0030983
Tsu03g03281 1098 Gene3D MutS, connector domain 387 550 IPR036678 GO:0005524|GO:0006298|GO:0030983
Tsu03g03281 1098 SMART DNAend 569 816 IPR007696 GO:0005524|GO:0006298|GO:0030983
Tsu03g03281 1098 Pfam MutS domain II 388 531 IPR007860 GO:0005524|GO:0006298|GO:0030983
Tsu03g03281 1098 ProSitePatterns DNA mismatch repair proteins mutS family signature. 918 934 IPR000432 GO:0005524|GO:0006298|GO:0030983
Tsu03g03281 1098 Gene3D - 551 778 - -
Tsu03g03281 1098 Coils Coil 139 159 - -
Tsu03g03281 1098 SUPERFAMILY DNA repair protein MutS, domain III 552 776 IPR036187 -
Tsu03g03281 1098 Pfam MutS domain I 269 380 IPR007695 GO:0005524|GO:0006298|GO:0030983
Tsu03g03281 1098 Gene3D - 782 1043 IPR027417 -
Tsu03g03281 1098 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 800 1037 IPR027417 -
Tsu03g03281 1098 MobiDBLite consensus disorder prediction 171 200 - -
Tsu03g03281 1098 MobiDBLite consensus disorder prediction 1 63 - -
Tsu03g03281 1098 PANTHER DNA MISMATCH REPAIR PROTEIN MSH7 252 1090 - -
Tsu03g03281 1098 MobiDBLite consensus disorder prediction 96 126 - -
Tsu03g03281 1098 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03281 Tsu-Chr3 45391229 45399361 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03281 K08737 - gmx:100818859 1704.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g03281 03 45391229 45399361 Tsu03g03281 03 45391229 45399361 ECH