Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03161 atgaggtcttcttattcttcttcttcgggTGCGATCAATATCGCTATGAGTGCTCAGAAGCTTGAAGTCGATAATCGGATTTCTCTACGGTTCTATTATCGGATTGCTGATAATATACTTCGACAGGCTGACATTTTTCGCGCAGAGAAGAACATTATTGACCTATATGTCATGCTTTTAAGATTTTCTAGtttgGCATCTGAGACAATACCGCGTCACCGAGAGTATAGATCATCTCCACAAAGCAAGAAACAATCATTGAAAAAGGGATTGTTGATTTCTTTGAATGAACTGGAGAAGTTGAAACCGTTGGTCCAGCAGAAGATCAACGAGCTTAACAGCAAAAATGCTCACCAACAAAATGGACGGGGAAATTTTCATTCAAATAATTCAGTGGATTTTTCTCCTGTGAAAAAGCAAACTTTGGCTAATAATAATGGAcaaataaagGCAGTCAGAGCAACTGCTAAGGAATACGTTTACCAAGGATCAAGTGGCCAGCAATTCTCTTATGTCAGGCCTGTGGAAGAGCAAGTGCGAAGACTATCTCTAACTCTCCCACCTCCAAAATCGGAAACTCTCTCTAGACATTCTATCCTTGGTCCCAATGGGCTTAATGGGCAGTGGCGGCCACCTACTATTAATACAGGGGTCAGGTATCCAACTAACATAGATCTGTCTCCAGTTGAACTACCAAGCTTACAGCCTCCCTTAGAAGATGTATCTCTGAAGAATAAAGATAATAGCATTGCAGAACTCCATAAATTAGATTTAAATTCAATTCCTACCGATAGTGAAGACAGCCAGCCCCAGCGCACTCAGGAATCTCCTTCTCTTATCTCTTTTGAAGCAACAGAAACCTCTGATCGAATAGAAGTTATCAGACAACCTTCTCCTCCACCCGTACTTGCTGAAGTGCAAGATTTGGTACCTCACATTAATGAGGGAGGATGTAAGACAGAGATTCCATCATCTGACAGTTGTGTTCATGCCGAGTCTCCCCTGCAACTGCACATTTCAACTGCTTTGATGGAAAGCTTTTTGAAACTTGCCATGTCAAATACTAAGAAAAATTTGGAGACTTGTGGTGTCCTTGCTGGTTTGCTTAAAAACAGGAAATTTTATATTACTGCTCTAATAATCCCGAAGCAGGAGTCAACCTCAGATTCTTGTCAGACTACAAATGAAGAGGAAATATTTGATGTGCAGGATAAACGATCACTTTTTCCCCTAGGGTGGATCCATACACATCCTACTCAATCTTGTTTCATGTCATCAATTGATCTGCACACACATTACTCATATCAGATTATGCTGCCAGAATCTGTTGCAATAGTCATGGCGCCGACAGATAGTTCAAGAAACCATGGCATTTTTCGGCTGACAACCCCTGGTGGAATGTCTGTTATTAAACAATGTGATCAACGCGGCTTTCATCCACATAACCAGCCTCCAGATGGTGGTCCTATTTACAATACCTGTACAGATGTATACATGAACCCCGATTTAAAATTTGATGTCATTGATCTTCGATGA 1536 0.3997 MRSSYSSSSGAINIAMSAQKLEVDNRISLRFYYRIADNILRQADIFRAEKNIIDLYVMLLRFSSLASETIPRHREYRSSPQSKKQSLKKGLLISLNELEKLKPLVQQKINELNSKNAHQQNGRGNFHSNNSVDFSPVKKQTLANNNGQIKAVRATAKEYVYQGSSGQQFSYVRPVEEQVRRLSLTLPPPKSETLSRHSILGPNGLNGQWRPPTINTGVRYPTNIDLSPVELPSLQPPLEDVSLKNKDNSIAELHKLDLNSIPTDSEDSQPQRTQESPSLISFEATETSDRIEVIRQPSPPPVLAEVQDLVPHINEGGCKTEIPSSDSCVHAESPLQLHISTALMESFLKLAMSNTKKNLETCGVLAGLLKNRKFYITALIIPKQESTSDSCQTTNEEEIFDVQDKRSLFPLGWIHTHPTQSCFMSSIDLHTHYSYQIMLPESVAIVMAPTDSSRNHGIFRLTTPGGMSVIKQCDQRGFHPHNQPPDGGPIYNTCTDVYMNPDLKFDVIDLR 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03161 511 CDD MPN_AMSH_like 336 511 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Tsu03g03161 511 ProSiteProfiles MPN domain profile. 337 467 IPR037518 -
Tsu03g03161 511 PANTHER AMSH-LIKE PROTEASE 1 511 - -
Tsu03g03161 511 MobiDBLite consensus disorder prediction 262 278 - -
Tsu03g03161 511 MobiDBLite consensus disorder prediction 186 212 - -
Tsu03g03161 511 SUPERFAMILY JAB1/MPN domain 336 467 - -
Tsu03g03161 511 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 334 440 IPR000555 GO:0005515|GO:0008233|GO:0008237
Tsu03g03161 511 MobiDBLite consensus disorder prediction 256 278 - -
Tsu03g03161 511 Gene3D - 4 131 - -
Tsu03g03161 511 Pfam USP8 dimerisation domain 16 103 IPR015063 -
Tsu03g03161 511 Coils Coil 95 115 - -
Tsu03g03161 511 SMART pad1_6 336 464 IPR000555 GO:0005515|GO:0008233|GO:0008237
Tsu03g03161 511 MobiDBLite consensus disorder prediction 188 212 - -
Tsu03g03161 511 Gene3D Cytidine Deaminase, domain 2 320 511 - -
Tsu03g03161 511 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 1 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03161 Tsu-Chr3 43681078 43688687 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03161 K11866 - gmx:100804754 835.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g03161 03 43681078 43688687 Tsu03g03161 03 43681078 43688687 ECH