Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02545 ATGTTGAATTGTCCAAAGGAATTCACAAAGAAGAACACCAGAAGACTTCTGGTGGTTGATAGAAGCTTCAAAGAGCAAGAAACCGAACCCGATGACGACGATGATTCTTCACTTCTCCCTCCACCACACATTCAAATTACCAGGTTGTTAAATGACGAAAACAGTCAAGATAAGAGCATGTTGTCCAAAGACACCGATAGCATTGAAGGTGAAGGTAAAAAGTTTAACAAACCGGGGAAATGCCGTTCCAAACCTAGCAAGACAGATTCTTCTATTGATTGTGGAGCTGATGCGGATGGTGATCAACATGTTCAACTCCAAGGGGCTCCTTCATCTCGGGAGGAAAAAGTTAGCAGCATGAAGACtGGATTGGTTCATGTTGCGAGGAAGATGCCTAAAAATGCTCATGCTCATTTTATACTTGGCTTGATGTACCAAAGATTAAACCAACCTCAAAAGGTAGTGCTTCCAAATGGACctgttttagtttttatatataggTTGCTCATTAggtcattaaatttttttcaggCTATATTGGCTTATGAGAAGGCAGAAGAGATATTACTCAGGCCTGAGGTTGAGATTGATAGACCAGAATTTCTTTCTTTAGTTCAGATTCACCATGCACAGTGCCTGATAATAGAAAGTTCATCAGAAAATAATTCAGACAAAGAACTTGAATCTCACGAACTTGAGGAAATTATTTCTAAACTGAAAGAATCAATACAATCAGATATCAGGCAGGCAGCTGTATGGAATACGCTGGGTTTTATCCTTCTTAAAACTGGTCGTGTGCAGAGTGCTATCTCAGTTTTGTCATCCTTGTTGGCCATTGCAACAGAGAACTATGATTGCCTAGGTAATCTTGGGATAGCTTATCTTCAAATAGGAAATTTGGAATCATCTGCAAAGTGTTTCCAAGAGTTGATCCTAAAAGATCAAAACCACCCTGCAGCATTGGTTAATTATGCTGCCCTTCTTTTGTGTAAATATGCTTCAGTTGTAGCAGGTGCTGGTGCAAATGCTGCTGAAGGTGCTTTAGCAGAACAGTCCAAGGCTGCTAATGTTGCCAAGGAATGTTTGTTAGCTGCAATTAAAGCAGATGGAAAATCAGCCCATATTTGGGCAAATCTTGCCTATGCATTTTCTATCAGTGGGGATCATCGAAGTTCCAGCAAATGCTTGGAGAAGGCAGCAAAACTGGAACCCAATTGCATGTCTACTCGTTATGCTGTTGCTAGCCATCGAGTAAAGGAGGCAGAAAGGTCTCAAGATGCTAGTGAACTGCTTTCATGTGCTGGAAATGAGATGGCTTCCATAATAAGAGATGGTGATTCATCCCTGGTTGAGCTTCCAATAGCATGGTCCGGGCTTGCAATGGTTCACAAGGCTCAGCATGAGATATCAGCAGCATATGAAAGTGAACAGAATGGGCTGGCAGAAATTGAAGAGCGCGCTGTTTCCAGTCTAAAGCAGGCCATAGCAGAAGAGCCAGATAATGCTGTGCAGTGGCACCAACTTGGTCTTCACAGTCTCTGTGCTAGGCAAtttaaaacatcacaaaaataCCTCAAAGCTGCTGTTGCCTGTGACAAGCGTTGCAGCTATGCATGGTCCAACCTCGGTGTCTCACTTCAACTATCAGAAGAACAATCACATGCTGAAGAAGTTTACAAGCGGGCTTTGTCTTTGGCAACAACACAAGAAGCACATACTATACTATCCAATATGGGAATTCTCTATCGCCATCagaaaaaatatcaacttgCGAAGGCTATGTTTACAAAGTCACTTGAACTACAACCAGGTTATGCTCCTGCATTCAACAATCTGGGTCTTGTTTTTATTGCTGAGGGTCTTTTAGAAGAGGCCAAGTATTGTTTTGAGAAAGCACTTGAATCAGATCCATTGCTGGATGCAGCCAAGTCTAACTTGATTAAGGTTGCCACAATGTCAAACATATGGAAGGCTCAAGCTATGGCCATGGCATCAGCAAATAGCATAATCTCTATTTCCTCTGCTTCATTGTTGAATGGAGCTCTTCAACCAAAAACAGCAACACTAATTAGTCTCCGAAAACACAACAAGAAGGACaatgaacaacaaagtacttcATTATCCTTCACAGCTTTTAAGATATCATCTCCAACAATCAGAAGACGTAGGTTGAGTTGTTCAGCTTCAGCATCTTCCTCTTCCACTCTCCCTTCAGCTCTTCTTTTTGACTGTGATGGAGTTCTTGTTGACACTGAAAAAGATGGCCACCGTATTTCTTTCAATGATACCTTCCAAGAGAAAGAACTAGGTGTTACCTGGGACGTGGAATTGTACGGTGAATTGCTCAAAATTGGAGGTGGAAAAGAAAGgatgaCGGCCTACTTTAACAAGACAGGTTGGCCTGCGAATGCCCCGACAGGTGAACAAGAAAGGAAAGATTTCATAGCTTCACTTCACAAGCGAAAGACAGAACTATTCATGGAACTTGTTGAGAAAAAATTGTTGCCTCTTCGCCCAGGTGTTGCAAAGCTTGTTGATCAGGCTTTAACTCAAGGAGTCAATGTTGCAGTTTGCAGCACTTCCAATGAGAAGGCGGTCTCTGCAATAGTATCATTTTTACTAGGATCTGAGCGGGCAGAAAAAATCAAGATATTTGCAGGAGATGTTGTTCCCCGCAAAAAACCTGATCCAGTAAGATTTTCATCATTCCAATGCTAA 2718 0.4065 MLNCPKEFTKKNTRRLLVVDRSFKEQETEPDDDDDSSLLPPPHIQITRLLNDENSQDKSMLSKDTDSIEGEGKKFNKPGKCRSKPSKTDSSIDCGADADGDQHVQLQGAPSSREEKVSSMKTGLVHVARKMPKNAHAHFILGLMYQRLNQPQKVVLPNGPVLVFIYRLLIRSLNFFQAILAYEKAEEILLRPEVEIDRPEFLSLVQIHHAQCLIIESSSENNSDKELESHELEEIISKLKESIQSDIRQAAVWNTLGFILLKTGRVQSAISVLSSLLAIATENYDCLGNLGIAYLQIGNLESSAKCFQELILKDQNHPAALVNYAALLLCKYASVVAGAGANAAEGALAEQSKAANVAKECLLAAIKADGKSAHIWANLAYAFSISGDHRSSSKCLEKAAKLEPNCMSTRYAVASHRVKEAERSQDASELLSCAGNEMASIIRDGDSSLVELPIAWSGLAMVHKAQHEISAAYESEQNGLAEIEERAVSSLKQAIAEEPDNAVQWHQLGLHSLCARQFKTSQKYLKAAVACDKRCSYAWSNLGVSLQLSEEQSHAEEVYKRALSLATTQEAHTILSNMGILYRHQKKYQLAKAMFTKSLELQPGYAPAFNNLGLVFIAEGLLEEAKYCFEKALESDPLLDAAKSNLIKVATMSNIWKAQAMAMASANSIISISSASLLNGALQPKTATLISLRKHNKKDNEQQSTSLSFTAFKISSPTIRRRRLSCSASASSSSTLPSALLFDCDGVLVDTEKDGHRISFNDTFQEKELGVTWDVELYGELLKIGGGKERMTAYFNKTGWPANAPTGEQERKDFIASLHKRKTELFMELVEKKLLPLRPGVAKLVDQALTQGVNVAVCSTSNEKAVSAIVSFLLGSERAEKIKIFAGDVVPRKKPDPVRFSSFQC 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02545 905 Pfam Tetratricopeptide repeat 260 319 - -
Tsu03g02545 905 Gene3D - 832 901 IPR023214 -
Tsu03g02545 905 Coils Coil 222 242 - -
Tsu03g02545 905 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 45 156 - -
Tsu03g02545 905 Gene3D Tetratricopeptide repeat domain 338 482 IPR011990 GO:0005515
Tsu03g02545 905 ProSiteProfiles TPR repeat profile. 572 605 IPR019734 GO:0005515
Tsu03g02545 905 Gene3D Tetratricopeptide repeat domain 575 671 IPR011990 GO:0005515
Tsu03g02545 905 Pfam Tetratricopeptide repeat 572 634 - -
Tsu03g02545 905 Pfam Tetratricopeptide repeat 373 406 IPR019734 GO:0005515
Tsu03g02545 905 SMART tpr_5 502 535 IPR019734 GO:0005515
Tsu03g02545 905 SMART tpr_5 250 283 IPR019734 GO:0005515
Tsu03g02545 905 SMART tpr_5 284 317 IPR019734 GO:0005515
Tsu03g02545 905 SMART tpr_5 373 406 IPR019734 GO:0005515
Tsu03g02545 905 SMART tpr_5 453 486 IPR019734 GO:0005515
Tsu03g02545 905 SMART tpr_5 606 639 IPR019734 GO:0005515
Tsu03g02545 905 SMART tpr_5 572 605 IPR019734 GO:0005515
Tsu03g02545 905 SMART tpr_5 536 569 IPR019734 GO:0005515
Tsu03g02545 905 SUPERFAMILY TPR-like 499 638 IPR011990 GO:0005515
Tsu03g02545 905 Gene3D Tetratricopeptide repeat domain 120 332 IPR011990 GO:0005515
Tsu03g02545 905 Gene3D Putative phosphatase; domain 2 751 831 IPR023198 -
Tsu03g02545 905 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 168 660 - -
Tsu03g02545 905 MobiDBLite consensus disorder prediction 20 101 - -
Tsu03g02545 905 MobiDBLite consensus disorder prediction 57 87 - -
Tsu03g02545 905 Gene3D Tetratricopeptide repeat domain 484 574 IPR011990 GO:0005515
Tsu03g02545 905 SUPERFAMILY TPR-like 250 539 IPR011990 GO:0005515
Tsu03g02545 905 ProSiteProfiles TPR repeat profile. 373 406 IPR019734 GO:0005515
Tsu03g02545 905 SUPERFAMILY HAD-like 738 899 IPR036412 -
Tsu03g02545 905 Pfam Haloacid dehalogenase-like hydrolase 740 898 IPR041492 -
Tsu03g02545 905 ProSiteProfiles TPR repeat profile. 606 639 IPR019734 GO:0005515
Tsu03g02545 905 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN 45 156 - -
Tsu03g02545 905 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN 168 660 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02545 487 638 Glycosyltransferase AT3G04240 24.837 7.01e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02545 - - gmx:100820184 964.526
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02545 03 30687193 30698014 Tsu03g02545 03 30687193 30698014 ECH