Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02521 ATGGCACCAACTGTTCCCATAGATTTTGCTGGACAAAAGGAATCCAGAAAGTACTCTCATTCACAAATCATGGGGAAATCTCGAAAATATTCCAAAGGTTATGCTACTACTGGCTTTGTTCCTGAATTCCGTCATGTTGTAGAGACTATGGGTGAATCAGATGGGTTGGGTAGCTCGGGAAGGCTTGACATGGAGCCTGCAGCATCAGCAGATTCCTATGCCCCGAGCAGGAAAGCCTCTGGTTTGAAAAGTGATGGTTATGGTGGTTTTGATGTACCATTTCAACTCTTCTCATTGTCTAAAATGTCGGCTAGGGAGAGAAAGGATTTGAAATTTAGATTAACTTGGGAACTTGATCAAGTGAGGAAACTTCAGAAGAAAATTGACAGAATGAATTCAAATATTGTTGGATTATCTCCGTCTAGTGACATAAGGAGCTGCAGTGTGGGACAGAAAAGGCCTCATCTTGAGAGCCAGCACAGTATACTTCAAGCATCGGTGCCACATGGTAAGAAAAAACCCTTGCCAGGACGTAGTGGTCCCAAGACAAAAAAAGGTATGTCTGGGCGATTTGAATACCCAAAACCTGTTGCACCAATGACTGCTTCATATGCTACATTGATGAAACAGTGCGAGAATTTACTTAACCGTTTGATGTCTAATCAATATGGTTGGGTTTTTAATGCTCCAGTTGATATTGTTAAATTGAACATTCCGGATTATTTCACTGTCATCAAACATCCAATGGATTTGGGTACCGTGAAGAGTAAACTAACGTCTGGCAAATATTCTAGTCCTATAGATTTTGCTGCTGATGTGAGGCTGACTTTCTCAAACGCCATGACATATAATCCACCTGGCAATGATGTACACGGCATCGCAGCAACACTTAGTAAAGCCTTTGAAACAAAATGGAAGTCCATTGAGAAGAAACTTCCCAACATCGATCATCGTGTCCCGTCTGAGCCTTCAAAACCTATTTGTGTAGAAACTGAAATTCCTGACCCAATTCCCCccacaaaaaagaataaaattacaCCAAATAACACTAATACCAAGCCAGAACCTGTCAAAAGAATTATGAGTGACATGGAGAAGCAGAAATTGAGTCAAGAGTTGGAGGACATGCTTGGAGAGTTGCCTGAAAACATTTTGGATTTCTTGAAAGAGCAAAGTCACAATGCAGGGCAAACCAACGATGATGAAATTGAGATTGATATTGATGTTCTAAGTGATGATACCTTATTCAAATTGCGGAAGCTTCTTGATGATTTTATGCTTGAGAAGCAACGATTTCAGCCAAAAGTTGGACAGTGTGAAATGGAGCTTCTTAATGAATCAGGTTTTAGCAATTCATCAGTGCAACCTTCTAAAgGCAATGAACTGGTTGAGGAGGATGTGGACATTGTTGGTGGGAATGATCCTCCTAATTCAAATTATCCTCCACTAGAGATTGAAAAAGATGGTGCCAACAGAAACAGTAAATGTAGCAGTTCAAGCAGCTCTAGTAGTGAATCTGGCTCATCATCCAGTGATTCAGATTCAAGTAGTTCATCTGGTAGTGAGTTAGATACTGCTAAAGCGTCAGAACCTCTTAGTTCTAAGGAAAATGTAGGACCTGGCTCTACTTATGATCAAAACAGGGGGGATCTTAGTAATCCAGAAACTGGAAATGATTCAACTAACCTGGGTAGCCAGGTTGATCAGAATTTGCAGACTAAGCCAGTTACTATTGAATCAGAAAGCCATCAAGATGGTAAGCTTGAAAAATGCAGAAATGTGTCTGCTATTAGTTTTGAGGCATGA 1806 0.402 MAPTVPIDFAGQKESRKYSHSQIMGKSRKYSKGYATTGFVPEFRHVVETMGESDGLGSSGRLDMEPAASADSYAPSRKASGLKSDGYGGFDVPFQLFSLSKMSARERKDLKFRLTWELDQVRKLQKKIDRMNSNIVGLSPSSDIRSCSVGQKRPHLESQHSILQASVPHGKKKPLPGRSGPKTKKGMSGRFEYPKPVAPMTASYATLMKQCENLLNRLMSNQYGWVFNAPVDIVKLNIPDYFTVIKHPMDLGTVKSKLTSGKYSSPIDFAADVRLTFSNAMTYNPPGNDVHGIAATLSKAFETKWKSIEKKLPNIDHRVPSEPSKPICVETEIPDPIPPTKKNKITPNNTNTKPEPVKRIMSDMEKQKLSQELEDMLGELPENILDFLKEQSHNAGQTNDDEIEIDIDVLSDDTLFKLRKLLDDFMLEKQRFQPKVGQCEMELLNESGFSNSSVQPSKGNELVEEDVDIVGGNDPPNSNYPPLEIEKDGANRNSKCSSSSSSSSESGSSSSDSDSSSSSGSELDTAKASEPLSSKENVGPGSTYDQNRGDLSNPETGNDSTNLGSQVDQNLQTKPVTIESESHQDGKLEKCRNVSAISFEA 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02521 601 MobiDBLite consensus disorder prediction 342 356 - -
Tsu03g02521 601 Gene3D - 197 319 IPR036427 GO:0005515
Tsu03g02521 601 MobiDBLite consensus disorder prediction 316 356 - -
Tsu03g02521 601 ProSiteProfiles NET domain profile. 351 433 IPR027353 -
Tsu03g02521 601 Pfam Bromodomain 211 294 IPR001487 GO:0005515
Tsu03g02521 601 ProSiteProfiles Bromodomain profile. 219 291 IPR001487 GO:0005515
Tsu03g02521 601 PANTHER TRANSCRIPTION FACTOR GTE8 25 579 - -
Tsu03g02521 601 PANTHER TRANSCRIPTION FACTOR GTE10 25 579 - -
Tsu03g02521 601 MobiDBLite consensus disorder prediction 51 77 - -
Tsu03g02521 601 MobiDBLite consensus disorder prediction 492 579 - -
Tsu03g02521 601 SUPERFAMILY Bromodomain 198 313 IPR036427 GO:0005515
Tsu03g02521 601 CDD Bromo_plant1 207 305 IPR037377 -
Tsu03g02521 601 PRINTS Bromodomain signature 272 291 IPR001487 GO:0005515
Tsu03g02521 601 PRINTS Bromodomain signature 254 272 IPR001487 GO:0005515
Tsu03g02521 601 PRINTS Bromodomain signature 238 254 IPR001487 GO:0005515
Tsu03g02521 601 PRINTS Bromodomain signature 222 235 IPR001487 GO:0005515
Tsu03g02521 601 Pfam Bromodomain extra-terminal - transcription regulation 361 423 IPR027353 -
Tsu03g02521 601 MobiDBLite consensus disorder prediction 163 192 - -
Tsu03g02521 601 Gene3D - 355 433 IPR038336 -
Tsu03g02521 601 MobiDBLite consensus disorder prediction 467 601 - -
Tsu03g02521 601 MobiDBLite consensus disorder prediction 1 22 - -
Tsu03g02521 601 SMART bromo_6 200 310 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02521 Tsu-Chr3 30100914 30106625 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02521 - - gmx:100776368 802.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02521 03 30100914 30106625 Tsu03g02521 03 30100914 30106625 ECH