Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02501 ATGGGGAAATCTTCAATCCCTATTGTGGGGGTTCTGTTGCTGTGCTTTCTAGTTTCATTTTCAGAAGCAGAATATAGAAAGTATAAAGATCCTAAAGTTCCATTGAATAGAAGAATCAAAGATTTGATGAGTAGAATGACTTTGGAGGAAAAGATAGGTCAAATGACTCAGCTTGAAAGAAGTGTTGCTACTCCTGAAGCGATTAGCAAGTACTTCATTGGTAGTGTGCTGAGTGGAGGAGGGAGTGTTCCGGCTCCAAAGGCATCTGCTGAGACATGGGTGAAAATGGTGAATCAGATCCAAAATGCAGCTTTATCGACTCCCCTTGGGATTCCAATGATTTATGGGATAGATGCTGTTCACGGTCACAATAATGTCTACAATGCTACTATTTTTCCTCACAATGTTGGTCTCGGAGTTACAAGGGATCCAGTGCTCATAAAAAAGATTGGAGAAGCAACTGCCCTTGAAGTTAGAGCCACAGGAATTCCATATGTTTTTGCTCCATGTATTGCGGTATGCAGAGATCCAAGATGGGGACGTTGTTACGAAAGCTACAGTGAGGATCCTCGGATTGTTAAAACTATGACTGAAATTATTCCTGGTCTGCAAGGAGATATTCCTGGAAATTCGAGGAAAGGAACTCCCTTTGTTGCTGGAAAGAACAAGGTTGCGGCTTGTGCTAAGCACTTTGTGGGAGATGGTGGCACTACCAAGGGTATCAATGAAAACAATACTGTGATAAGCTACAAAGGATTGCTTGGAATTCACATGCCAGCATACTATGACTCTGTTATCAAGGGTGTTTCAACAGTGATGATCTCCTACACTAGCTGGAATGGGAAAAAGATGCATGCTAACCGGGATCTTGTCACTGGTTACCTCAAGAACAAACTGCGGTTCAggGGTTTTGTCATATCAGATTGGCAGGGTATTGATCGGATTACCTCTCCTCCTCATGCTAACTATTCATACTCAGTTCAAGCTGGTGTTAGTGCTGGAATTGATATGATTATGGTTCCTTATAACTTCACTGAGTTCATCGATGACCTAACCTTTCAAGTAAAGAACAATATTATCCCAATAAGCAGGATTGATGATGCTGTGGCAAGAATCTTAAGAGTAAAATTTACCATGGGCCTTTTTGAAAATCCAATTGCTGATCTAAGCCTAGCAAACCAATTGGGTAGCAAGGAACATAGGGAGTTAGCAAGAGAAGCTGTTCGAAAATCCCTAGTGTTGCTAAAGAATGGTAAATATGCTAAGCCACTGCTTCCCCTtcccaagaaatcttcaaaaattTTGGTTGCAGGAAGTCATGCTGACAATTTGGGTAATCAATGTGGTGGATGGACAATTACTTGGCAAGGGCTTAGTGGTAGTGATCTTACATCCGGTACAACCATCCTCAATGCTATAAAGCATACAGTGGATCCTGCAACTGAAGTTGTCTATAATGAAAATCCTGATGCCAACTTTATCAAGTCAAACAAATTTAACTATGCCATAGTTATTGTAGGAGAACCCCCTTATGCCGAGACATTCGGCGACAGCTTGAATCTTACAATAGCTGAACCAGGTCCAAGCACCATCACCAATGTATGTGGCTCAATTCAATGTGTAGTTGTTCTCGTCACTGGGCGACCGGTTGTGATTCAACCATATCTGTCAAAAATTGATGCACTTGTAGCTGCATGGCTTCCTGGCACTGAAGGCCAAGGTGTTGCCGACGTTCTCTATGGTGACTATGCATTCACCGGCAAGCTGGCAAGGACATGGTTCAAGACAGTTGACCAGCTTCCAATGAATGTTGGTGATAAACATTATGACCCTCTATTTCCATTTGGATTTGGTTTGACTACAAACCTTACCAAATATTGA 1881 0.4152 MGKSSIPIVGVLLLCFLVSFSEAEYRKYKDPKVPLNRRIKDLMSRMTLEEKIGQMTQLERSVATPEAISKYFIGSVLSGGGSVPAPKASAETWVKMVNQIQNAALSTPLGIPMIYGIDAVHGHNNVYNATIFPHNVGLGVTRDPVLIKKIGEATALEVRATGIPYVFAPCIAVCRDPRWGRCYESYSEDPRIVKTMTEIIPGLQGDIPGNSRKGTPFVAGKNKVAACAKHFVGDGGTTKGINENNTVISYKGLLGIHMPAYYDSVIKGVSTVMISYTSWNGKKMHANRDLVTGYLKNKLRFRGFVISDWQGIDRITSPPHANYSYSVQAGVSAGIDMIMVPYNFTEFIDDLTFQVKNNIIPISRIDDAVARILRVKFTMGLFENPIADLSLANQLGSKEHRELAREAVRKSLVLLKNGKYAKPLLPLPKKSSKILVAGSHADNLGNQCGGWTITWQGLSGSDLTSGTTILNAIKHTVDPATEVVYNENPDANFIKSNKFNYAIVIVGEPPYAETFGDSLNLTIAEPGPSTITNVCGSIQCVVVLVTGRPVVIQPYLSKIDALVAAWLPGTEGQGVADVLYGDYAFTGKLARTWFKTVDQLPMNVGDKHYDPLFPFGFGLTTNLTKY 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02501 626 PRINTS Glycosyl hydrolase family 3 signature 224 240 IPR001764 GO:0004553|GO:0005975
Tsu03g02501 626 PRINTS Glycosyl hydrolase family 3 signature 108 124 IPR001764 GO:0004553|GO:0005975
Tsu03g02501 626 PRINTS Glycosyl hydrolase family 3 signature 178 194 IPR001764 GO:0004553|GO:0005975
Tsu03g02501 626 PRINTS Glycosyl hydrolase family 3 signature 294 312 IPR001764 GO:0004553|GO:0005975
Tsu03g02501 626 PRINTS Glycosyl hydrolase family 3 signature 132 151 IPR001764 GO:0004553|GO:0005975
Tsu03g02501 626 Pfam Glycosyl hydrolase family 3 C-terminal domain 412 620 IPR002772 GO:0004553|GO:0005975
Tsu03g02501 626 PANTHER PERIPLASMIC BETA-GLUCOSIDASE-RELATED 12 624 - -
Tsu03g02501 626 Pfam Glycosyl hydrolase family 3 N terminal domain 47 375 IPR001764 GO:0004553|GO:0005975
Tsu03g02501 626 Gene3D - 397 623 IPR036881 GO:0004553|GO:0005975
Tsu03g02501 626 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 412 620 IPR036881 GO:0004553|GO:0005975
Tsu03g02501 626 PANTHER BETA-D-GLUCOSIDE GLUCOHYDROLASE 12 624 - -
Tsu03g02501 626 Gene3D - 21 396 IPR036962 GO:0004553|GO:0005975
Tsu03g02501 626 SUPERFAMILY (Trans)glycosidases 26 411 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02501 Tsu-Chr3 29605937 29610460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02501 8 621 Glycoside Hydrolase AT5G20950 78.699 0.0 992
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02501 K05349 - gmx:547729 1118.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02501 03 29605937 29610460 Tsu03g02501 03 29605937 29610460 ECH