Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02430 ATGCCAAGCAAACTAAGAAAAGCAATTGGAGCAGTAAAAGACCAAACAAGCATTAGCCTAGCAAAGGTAACAAATGCAGCAAATTTAGAGGTAACAATTCTTAAAGCAACAACACATGATAAAAATCCAATTGAAGAACGTTATGTGCATGAAATTGTGAACATGGTATCTTCAAACAAAGCATATGCTGCTGAATGTGCACAATGTATAGGCAAAAGAATTGGCAAAACAAGAAATTGGGTTGTAGCTCTTAAATCTCTTATGATTGTCCTTAGAATATTTCAAGATGGTGATCCATATTTTCCTAGAGAAGTTTTTCATTCAATGAAAAGGGGTGCCAAAATTCTCAACCTTTCAAGTTTTAAAGATGATTCAAATTCTAGTCCTTGGGATTACACTGCATTTATAAGAACATTTGCATTGTACCTTGATGAAAGGTTAGATTGCTTCCTAACAGGAAAGCTTCAACGACGATTCACGTACCATACGCGGTTTCATGAAAAAAGGCAAAGGAATGAACCTGGTATTAGAGACATGAAACCTACATTGATTCTTAATAGAATCACTTATTGGCAAATGTTGTTGGATAGAGCTATTGGCACAAGACCGACCGGTTCGGCCAAGAACAATCGGTTGGTTCAGATTTCTCTTTATGCTATTGTGCAAGAAAGTTTTGATCTTTACAAAGATATCTCTGATGGACTTGGTGTTATTTTGGATAATTTCTTCAATTTACCACTTTCAGCTTGTGTTACTGCATTCAATGCATGTGTTAAATCATATAAACAATTTGATGAGTTATCtgcattttattctttttgtctAAGCATTGGAATTGGAAGATCCTATGAGTATCCAACTGTACAAAAAGTTTCTGAAGAGCTTATGGAGACATTACAAGCTTTCTTGAAAGATCAAGCTTCATTCCATACAAATAATAATGGTTCTAaaaattttattgtttctgGACACAAAAACTCTAATGCATCATGTTCAAGTTCATCTCAAAATGAATTAGGTATTGAAAGATGTGGAACACTTGaaagattttttgaaaatggttctGATTTTGGATCTCAATGTACATCATTGGAAGATCTAATGAGTGCTACTGATGCAGCCGGAAGTTCGCGCGGTTCGCTTGAACATGATAGATATTCTGAGGAATCTGATGAAGATGAGAAACAATCATCACAATATTATGATGATGAGTTAACAACTAGTGCTAATGCTAATGGTTCTTGTTCTATTAGATCATTTTCAATTGATCACAATTCAAGGTCAAGTATTGATATAATAAGTGTTGATGATATGCATCATGATCAAGTGCTGCAACATAATCAAACAAATGAATGTGAGAAATTACAAAACACAAAAGGTGGATCCAATTCTAATGATAGTTCCAAAGATTGTTGGGAAATAGTGTTGGCAAAGACAGTAGTAAATACTAATGAAACATCATCACCTAAATTGGATAATGGAATTGACCCTTTTCTCAATTTATTTGATCAAGCTATAGTACCTCAACAAAAATACAATCCTTTCCTTGATGATGTTGGAACTTCATATCCTCATCATGCCACCACTAGTGTTAgtattgatgatatttttgatgCATCACTATCACCAACTTTTAAGGCAACAACATCACCAACCTTTAAGGCTCATGACCCTCTTGAATTAACTGTCTCTAATCAAAATTCTAACTCTTTAACAAATTTAGATCTTATTTTTGGTGACATATATTCAAATGACACAACAGTGGCACCAAGTTTTCAGGCTCAAAATTCTCTTCAGATGATTGTGGCACCAAGCTTTGAGGctcaaaattcttttaagaaTGTTTCAACACCAACTTTTCAAGTGCATAATAATTCAAATGATAATGCCATAGTAGAGTCCCCAATCTATAGTGTTGAAAATCCTAATACTAGTATTGTTCCTTTTGATCCATATAGTAATTTTTATGATTCAACAGTGGCACCAACATTTAGTGCAAATGGTGGTAATGAAACAACATTGACAACACAAACAAAAGAAGATGATCCATTTGGGCCATGGCCTAGTGCAACGACGAACGATCAAACGTCTAATATGTCATCGACGCAAGATCAAACTTTGTTGCGGCTTCAACAACTGTGGTTAGAACAACAAAACAAGATTATAGCAAAACATATgacttga 2184 0.3315 MPSKLRKAIGAVKDQTSISLAKVTNAANLEVTILKATTHDKNPIEERYVHEIVNMVSSNKAYAAECAQCIGKRIGKTRNWVVALKSLMIVLRIFQDGDPYFPREVFHSMKRGAKILNLSSFKDDSNSSPWDYTAFIRTFALYLDERLDCFLTGKLQRRFTYHTRFHEKRQRNEPGIRDMKPTLILNRITYWQMLLDRAIGTRPTGSAKNNRLVQISLYAIVQESFDLYKDISDGLGVILDNFFNLPLSACVTAFNACVKSYKQFDELSAFYSFCLSIGIGRSYEYPTVQKVSEELMETLQAFLKDQASFHTNNNGSKNFIVSGHKNSNASCSSSSQNELGIERCGTLERFFENGSDFGSQCTSLEDLMSATDAAGSSRGSLEHDRYSEESDEDEKQSSQYYDDELTTSANANGSCSIRSFSIDHNSRSSIDIISVDDMHHDQVLQHNQTNECEKLQNTKGGSNSNDSSKDCWEIVLAKTVVNTNETSSPKLDNGIDPFLNLFDQAIVPQQKYNPFLDDVGTSYPHHATTSVSIDDIFDASLSPTFKATTSPTFKAHDPLELTVSNQNSNSLTNLDLIFGDIYSNDTTVAPSFQAQNSLQMIVAPSFEAQNSFKNVSTPTFQVHNNSNDNAIVESPIYSVENPNTSIVPFDPYSNFYDSTVAPTFSANGGNETTLTTQTKEDDPFGPWPSATTNDQTSNMSSTQDQTLLRLQQLWLEQQNKIIAKHMT 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02430 727 MobiDBLite consensus disorder prediction 378 394 - -
Tsu03g02430 727 Gene3D - 2 155 IPR008942 -
Tsu03g02430 727 PANTHER CLATHRIN ASSEMBLY PROTEIN 1 725 IPR045192 GO:0048268|GO:0072583
Tsu03g02430 727 Gene3D ANTH domain 167 318 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Tsu03g02430 727 SMART enth_2 27 157 IPR013809 -
Tsu03g02430 727 MobiDBLite consensus disorder prediction 372 400 - -
Tsu03g02430 727 Pfam ANTH domain 29 305 IPR011417 GO:0005543
Tsu03g02430 727 MobiDBLite consensus disorder prediction 666 699 - -
Tsu03g02430 727 PANTHER CLATHRIN COAT ASSEMBLY PROTEIN AP180 1 725 - -
Tsu03g02430 727 SUPERFAMILY ENTH/VHS domain 28 150 IPR008942 -
Tsu03g02430 727 CDD ANTH_N_AP180_plant 29 150 - -
Tsu03g02430 727 ProSiteProfiles ENTH domain profile. 21 157 IPR013809 -
Tsu03g02430 727 SUPERFAMILY GAT-like domain 173 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02430 Tsu-Chr3 28159571 28161754 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02430 - - mtr:MTR_3g080490 979.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02430 03 28159571 28161754 Tsu03g02430 03 28159571 28161754 ECH