Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02345 ATGGCGAATCATTGCAAGTCAAATGAAGAAATTGCAAATGAAGCTATCAAACGCGCTTTGAGGTCTCTACGGAAGCGGCATTTGAACGAAGAAGGAGCTCATCATGCagctttttcttctctttctagACCTATTGTTTCTCAGGGATCTGAATGGAAAGAGAAAGCAGAGAGTCTGGAAGTGGAACTTCAACAATGTTACAAAGCTCAATCCCGAGTATCTGAGCAGCTTGTTGTGGAAATAGGTGAATCTAGAACTTTGAAAGCTTTGGTTCAAGAGAAAGAAACTGCAGTTGCTGATTTGCAAAAAGCGTTCACTGAAGCGAGGGATGAGTGCATGCAATTGAAAAAGGACTTAGAAGACAAAATTAAAGCTCTTGAACTCGTTCTGAGTGAGAATGcagaacttaaaacacaattggAGCAAATGACTATTAGAGCCAAGAATGCTGAAACTGAAAATAAGACATTGGTGGATCGCATGATGTTAGAAAAAATGAAGGACGCTGAACAACTAAATGAGGCAAACCAACTGTATGATGACATGATCAAGCAGCTAAAGGCCAGTGGTTTAGAAAAACTTGCAAGGCAGCAGATAGATGGTATAGTTCACAGAAGTGAAGAAGGCGCCGGCATTTTTTTAGAGTCGAACATCCCATCCACATGCAAACACAGGCTCCAAGCACATGAAGGTGGTTGTGCTTCCATATTGTTCCAGTGCAATTCTAATAAATTGATTACAGGGGGACAAGATCGAACAGTTAAAGTGTGGGATACAGATTCAGGATCCTTAATTTCCAATCTTTATGGTTGCCTCGGCTCTGTATTAGATCTCACAATCACCAATGATAATAGATCTGTTATTGCTGCTAGCAGCTCAAACAACTTGTATGCGTGGGATCTCAACTCAGGTCGAGTCCATCATACCCTTACTGGCCACACAGATAAAGTCTGTGCTGTTGATGTCAGCAAGGTTTCCAGCCGTCATGTTGTCAGTGCAGCTTATGATCGCACTATAAAAGTTTGGGACTTGCTTAAAGGTTATTGCATTAACACAATCATTTTCCACAGCAACTGCAATGCTCTTTGCCTCAGCACTGATGGACAGACCATATTTTCTGGACATGTAGACGGAAATCTTCGATTATGGGATATTAAGACTGGAAAACTACTTAGCGAGGTTGCGGCACACTCACTTGCGGTCACATCGATATCTCTTTCTCGAAATGGAAATGTTGTATTAACGAGTGGAAGGGACAATCTGCACAATTTGTTTGACGTGCGATCTCTAGAAGTTAGTGGCACACTAAAAGCTTCCGGAAATCGAGTGGCTTCTAATTGGAGTCGCTCGTGTATTAGTCCGGGTGATAAAAATGTTGCTGCCGGATCATCTGATGGATCGGTTTATGTTTGGTCAGTGTCTAAAGGTGATATAGTCAGCACTCTGAAGGAACATACTTCTTCTATCTTGTGTTGTTCTTGGAGTGGGCTTGGAAGACCCTTAGCTTCAGCTGACAAGAATGGAGTTGTTTGTATATGGACCTAA 1545 0.4097 MANHCKSNEEIANEAIKRALRSLRKRHLNEEGAHHAAFSSLSRPIVSQGSEWKEKAESLEVELQQCYKAQSRVSEQLVVEIGESRTLKALVQEKETAVADLQKAFTEARDECMQLKKDLEDKIKALELVLSENAELKTQLEQMTIRAKNAETENKTLVDRMMLEKMKDAEQLNEANQLYDDMIKQLKASGLEKLARQQIDGIVHRSEEGAGIFLESNIPSTCKHRLQAHEGGCASILFQCNSNKLITGGQDRTVKVWDTDSGSLISNLYGCLGSVLDLTITNDNRSVIAASSSNNLYAWDLNSGRVHHTLTGHTDKVCAVDVSKVSSRHVVSAAYDRTIKVWDLLKGYCINTIIFHSNCNALCLSTDGQTIFSGHVDGNLRLWDIKTGKLLSEVAAHSLAVTSISLSRNGNVVLTSGRDNLHNLFDVRSLEVSGTLKASGNRVASNWSRSCISPGDKNVAAGSSDGSVYVWSVSKGDIVSTLKEHTSSILCCSWSGLGRPLASADKNGVVCIWT 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02345 514 Gene3D - 85 357 IPR015943 GO:0005515
Tsu03g02345 514 PANTHER AUTOPHAGY-RELATED 16, ISOFORM F 9 514 - -
Tsu03g02345 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 310 352 IPR001680 GO:0005515
Tsu03g02345 514 Pfam WD domain, G-beta repeat 348 384 IPR001680 GO:0005515
Tsu03g02345 514 Pfam WD domain, G-beta repeat 307 343 IPR001680 GO:0005515
Tsu03g02345 514 Pfam WD domain, G-beta repeat 477 513 IPR001680 GO:0005515
Tsu03g02345 514 Pfam WD domain, G-beta repeat 221 258 IPR001680 GO:0005515
Tsu03g02345 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 482 514 IPR001680 GO:0005515
Tsu03g02345 514 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 482 514 - -
Tsu03g02345 514 CDD WD40 222 513 - -
Tsu03g02345 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 361 393 IPR001680 GO:0005515
Tsu03g02345 514 Coils Coil 91 160 - -
Tsu03g02345 514 Gene3D - 358 514 IPR015943 GO:0005515
Tsu03g02345 514 SMART WD40_4 475 514 IPR001680 GO:0005515
Tsu03g02345 514 SMART WD40_4 303 343 IPR001680 GO:0005515
Tsu03g02345 514 SMART WD40_4 219 258 IPR001680 GO:0005515
Tsu03g02345 514 SMART WD40_4 387 426 IPR001680 GO:0005515
Tsu03g02345 514 SMART WD40_4 429 472 IPR001680 GO:0005515
Tsu03g02345 514 SMART WD40_4 261 300 IPR001680 GO:0005515
Tsu03g02345 514 SMART WD40_4 346 384 IPR001680 GO:0005515
Tsu03g02345 514 Pfam Autophagy protein 16 (ATG16) 47 173 IPR013923 -
Tsu03g02345 514 Coils Coil 6 26 - -
Tsu03g02345 514 Coils Coil 169 189 - -
Tsu03g02345 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 309 IPR001680 GO:0005515
Tsu03g02345 514 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 310 344 - -
Tsu03g02345 514 ProSitePatterns Trp-Asp (WD) repeats signature. 371 385 IPR019775 -
Tsu03g02345 514 ProSitePatterns Trp-Asp (WD) repeats signature. 330 344 IPR019775 -
Tsu03g02345 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 226 267 IPR001680 GO:0005515
Tsu03g02345 514 PANTHER AUTOPHAGY PROTEIN 16-LIKE 9 514 IPR045160 GO:0000045
Tsu03g02345 514 ProSitePatterns Trp-Asp (WD) repeats signature. 245 259 IPR019775 -
Tsu03g02345 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 453 481 IPR001680 GO:0005515
Tsu03g02345 514 SMART ire1_9 450 483 IPR018391 -
Tsu03g02345 514 SMART ire1_9 362 395 IPR018391 -
Tsu03g02345 514 SMART ire1_9 278 311 IPR018391 -
Tsu03g02345 514 SUPERFAMILY WD40 repeat-like 217 513 IPR036322 GO:0005515
Tsu03g02345 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 394 435 IPR001680 GO:0005515
Tsu03g02345 514 PRINTS G protein beta WD-40 repeat signature 245 259 IPR020472 -
Tsu03g02345 514 PRINTS G protein beta WD-40 repeat signature 330 344 IPR020472 -
Tsu03g02345 514 PRINTS G protein beta WD-40 repeat signature 371 385 IPR020472 -
Tsu03g02345 514 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 226 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02345 Tsu-Chr3 26471496 26475013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02345 301 513 Miscellaneous Gene Families AT5G08390 20.833 8.46e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02345 K17890 - gmx:100778336 837.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02345 03 26471496 26475013 Tsu03g02345 03 26471496 26475013 ECH