Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02312 ATGGATCCCAATCCAGGAACCTTCCCGATTCTCTCCTACGTCATGTCACGCTTCCCTTCCTTAACATCCAAAACCCTCACATCCTCTAACTCCGACACCGAATTAGACAACATCGAATTAAACGACATcgaacaacaacaaccaccttCTCCACCACCACCTCACTCCCAAATCATCGATCAAATGCCAAACCTAACAAACCCCGAACTCATCCAATCTATGGCTCGAGCCATCTCCGACGTTCAAGAAGCCCGCTCCATTCTTAAACTAATCGGCGAACGTCCGACTCACGAGGAGGTCGATCACGCCAAAGCCAAACTGATTGAATTAGAAGGCCAGCTGTCACGACAGCTGGAAGGAATCGTACTTCTAACTCGACCTCCGGAGATCGAGATCCATGGATGGAGAGCACACCTAGCTGAGAAGGAGAAACAGTGTAGAGAAGAAGCAGAAAAGGAGAAACAGATTTGGAAATCGTTTATTCAACTTGATGAGATGCATGAAGGTTATGAGAAGCTTCTTAAGGATGCTGAGAAACGATTGGTTAGAATGTATGATTCTGCTGAAGATGGTGATATTGGTGGAAGAAGAGATAGTGATGTTGGTGGTGAGGTTAGTGAAGAAGTTGTGGGGATTCTTCAAGAAGCTGATGGGAATGGAATTGAACGGATTGATCTTTCTGATCGGAACTTGAAGATTTTGCCGGATGCTTTTGGCAGGATTCCTGGTTTGCTTGTGCTTAATGTTTCAGCTAATCAACTTTCGGCAATTCCCGAGACAATAGCTGGATTGCAAAATTTGGAGGAGCTTAATCTCTCTGCAAATCGTTTGGAATCGCTTCCCGATTCAATTGGGTTactacaaaagttgaaattgcTCAATGTTTCTGGAAACAAGCTTACTGCCCTTCCTGATACCATTTGTCAGTGCAGGTCATTGGTGGAGCTGGATGTAAGCTTTAACGATCTGTCATACTTACCAACAAACATTGGGTATGAATTACCAAACTTGAAGAAACTCCTGATTCATTTGAACAAAATTCGATCTCTTCCCTTATCCATTTGTGAGCTGAAGTCGTTGCACTATTTGGATGCTCATTTTAATGAGCTACATGGGCTTCCCAATGCAATTGGGAGACTGACTAACCTGGAAATTCTCAACCTGAGTAGTAACTTCGCTGATCTTAAACAACTTCCAGAGACATTTGGTGAATTGACTAATCTCAGGGAATTGGATCTCAGCAATAATCAGATTAACGCACTTCCCGATACATTTGGTTGTCTTGATAATTTGACCAAGCTCAACTTGGAACAAAATCCTCTTGAACTGCCACCAATGGAGATTGTAAATCAAGGGGTTCAAGCAGTAAAGACTTTTATGATCACGAGGTGGATTGATATGTTGCAAGAGGAAGAAAGAAAACACAATGAAGAAATGCAAGAACAAGTAGAGGGTGGCTGGTTAACTCGAAGCACCTCGTGGTTGAAGAATGCTACTGGAAATGTAATTGGGTATATTGGAACTGTTGGAACTCCTATGTCACCCAAATCTCCCAGAGATGTTGCTTATCTTAATCAGCAGTTATGA 1587 0.4178 MDPNPGTFPILSYVMSRFPSLTSKTLTSSNSDTELDNIELNDIEQQQPPSPPPPHSQIIDQMPNLTNPELIQSMARAISDVQEARSILKLIGERPTHEEVDHAKAKLIELEGQLSRQLEGIVLLTRPPEIEIHGWRAHLAEKEKQCREEAEKEKQIWKSFIQLDEMHEGYEKLLKDAEKRLVRMYDSAEDGDIGGRRDSDVGGEVSEEVVGILQEADGNGIERIDLSDRNLKILPDAFGRIPGLLVLNVSANQLSAIPETIAGLQNLEELNLSANRLESLPDSIGLLQKLKLLNVSGNKLTALPDTICQCRSLVELDVSFNDLSYLPTNIGYELPNLKKLLIHLNKIRSLPLSICELKSLHYLDAHFNELHGLPNAIGRLTNLEILNLSSNFADLKQLPETFGELTNLRELDLSNNQINALPDTFGCLDNLTKLNLEQNPLELPPMEIVNQGVQAVKTFMITRWIDMLQEEERKHNEEMQEQVEGGWLTRSTSWLKNATGNVIGYIGTVGTPMSPKSPRDVAYLNQQL 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02312 528 ProSiteProfiles Leucine-rich repeat profile. 266 287 IPR001611 GO:0005515
Tsu03g02312 528 Pfam Leucine rich repeat 399 441 IPR001611 GO:0005515
Tsu03g02312 528 Pfam Leucine rich repeat 266 323 IPR001611 GO:0005515
Tsu03g02312 528 SMART LRR_bac_2 357 376 - -
Tsu03g02312 528 SMART LRR_bac_2 334 353 - -
Tsu03g02312 528 SMART LRR_bac_2 264 283 - -
Tsu03g02312 528 SMART LRR_bac_2 405 424 - -
Tsu03g02312 528 SMART LRR_bac_2 241 260 - -
Tsu03g02312 528 SMART LRR_bac_2 310 329 - -
Tsu03g02312 528 SMART LRR_bac_2 380 401 - -
Tsu03g02312 528 SMART LRR_bac_2 287 306 - -
Tsu03g02312 528 SMART LRR_typ_2 380 404 IPR003591 -
Tsu03g02312 528 SMART LRR_typ_2 334 357 IPR003591 -
Tsu03g02312 528 SMART LRR_typ_2 264 286 IPR003591 -
Tsu03g02312 528 SMART LRR_typ_2 287 310 IPR003591 -
Tsu03g02312 528 SMART LRR_typ_2 428 451 IPR003591 -
Tsu03g02312 528 SMART LRR_typ_2 311 333 IPR003591 -
Tsu03g02312 528 SMART LRR_typ_2 241 263 IPR003591 -
Tsu03g02312 528 SMART LRR_typ_2 405 427 IPR003591 -
Tsu03g02312 528 Gene3D Ribonuclease Inhibitor 215 480 IPR032675 -
Tsu03g02312 528 PRINTS Leucine-rich repeat signature 267 280 - -
Tsu03g02312 528 PRINTS Leucine-rich repeat signature 405 418 - -
Tsu03g02312 528 SUPERFAMILY L domain-like 221 441 - -
Tsu03g02312 528 ProSiteProfiles Leucine-rich repeat profile. 407 428 IPR001611 GO:0005515
Tsu03g02312 528 PANTHER LEUCINE-RICH REPEAT-CONTAINING 3 509 - -
Tsu03g02312 528 Coils Coil 465 485 - -
Tsu03g02312 528 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 3 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02312 Tsu-Chr3 26139091 26143065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02312 221 446 Receptor kinase-like Gene Family AT5G56040 31.923 3.43e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02312 - - gmx:100803823 738.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02312 03 26139091 26143065 Tsu03g02312 03 26139091 26143065 ECH