Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02311 ATGTTGAAAAAGTTATATGTATGTGTATTAGAAGCCAAAGACTTACCCATCAAGAATTCTCGTGTGAAGCTTCAACTTGGAAAGTTCAAGTACAAGACAAGGATATCAAGAAACACGTTCAATCCCACTTGGAACGAGGAATTTGTTTTCAAGGTAAAGGATATTGCAGAGGAAGTTCTTGTTGTCACTGTTGTTAATGATCATAGTGATGATGAATTAAAGGTGATTAATTGTGATGTAGTGGATTTTGTCGGTGAAGTGATTATTCCGATTGGTTCAGTTGGTTTTGATCAGGATAATAATAAGCAAATATCGCCACCGACGTGGTTCTCCCTTCAATGTTCTAACAAGAGTGGCagatttttcaacaaattttgtGGGAAGATTCTCCTTACAATTTCTCTTCATTGTAAAAGTCGTGCTTCTTCGATGAATCATAGGCATTCTCCAAACTCAACTATTGCAATTGAGAACTCGGCAACAGACTTGGATGATCTTCACACTTCATCTCAGCCATCTTTTCGTAAAGTTCGTAAAATGGGTGAAGGCAAACAGTTGTTGAAGGTTATTGCTAATCGTCTAGATaggatttttaataaaaaggtaCGGAACTCAAAATCTGCGGATTGTTCAGAAACATCAAATTCATTATCTGATTATGAAGATAGTGTAGAAGAAAATTCACCCCCATGTAGCTTTGAAGAAGGCATTGCAGTAATGGAATCAAGAGATAACCAACCAGAAAGTCCTGAAAATTTGCCTGGCGGTATTCTAGTAGATAAAATTTATGTAGTATCTCCATATAATCTTAATGTGGTTCTTTTCGCACCGAATTCTCAGTTTAGGAAAGATTTGGCAGAACTACAAGGGACAACAAATTTGCAAGAAGGGGCCTGGTCCTGGAAAGGTGAAGACATGTCTTGCTTGACTCGTGTTGTTACCTATACAAAAGCTGCTTCAAAATTAGTCAAGGCTGTTATTGCCACTGAGGAGCAAACCTATATTAGAGTGACCAAAGGTGAATTTGTTGTACTTGTTAGTGTGTGCACACCTGATGTTCCATATGGGAATACATTTCGGATTGAATTGCTTTACAAGATAATGCCGGGAGAAGAGGTGTCTTCGGGGGATGAATCCTCACATCTTGTGATATCATGGGGAATTGTCTTCCTACAAAGCACAATGATGAAAGGTATGATAGAGAGTGGAGCTAGACAAGGCTTGAAGGAGAGTTTTGATCAGTTTTCTAACCTACTTGCTCAAAGTTTCAAGGTGCTAGATAAGCAGGAGTTGATAAACAAAGAACAATTGTTGGCAACTTTGCAGACAGAAAGCCAGTGGAATTGGTGGCAAGCTATTGCATACTTCTGGAATTTCACAGTAGTTTCCACATTTTTTatggttttgtattttttactgCATATTTTAAGgtgtggtccaagtcaacctcAGGGCTTGGAGTTTCGAGGGATTGAACTTCCAGATAGCTTAGGAGAGCTAGTTACAAGCGGAATTTTAGTTATCCAGTTGAAACGTGTTTATCATATGGTAGCTCACTTTGTGCAAGCTAGATTTCAAATGGGAACTGACCATGGCATGAAAGCACATGGTGATGGATGGGTTGTTACTGTAGCTTTAATTGAGGGGGTTGACCTGGCCTCATTGGAGTCAACAGGCTTTTCAGATCCCTATGTGGTTTTCACCTGTAATGGACAAACAAGGTCAAGCTCTGTCAAGCTTGAGACATCAGATCCTCATTGGAATGAGATATTAGAGTTTGATGCTATGGAAGAACCGCCGTCAGTTTTACATGTGGaagtttttgattttgatggtcCATTTGACCAAGATGTTTCACTTGGACATGCTGAGATCAATTTCCTAAAACACACATCAACAGAATTGGCAGACATGTGGCTCATGCTTGAAGGTAAGCTCGCACAATCTGCTCAATCGAAGCTGCATTTGAGAATTTTCTTGGACAATAATAAAGGAGTTGAAACTATCAAGGATTACTTGGAGAAGAAGGAAAAGGAAGTAGGTAAAAAGTTGAATCTTCCATCACCTCAAAGGAATTCTACATTCCAGAAACTGTTTGGATTGCCTCCAGAAGAGTTCCTAATCAATGATTTCACATGTTCCCTGAAAAGAAAATTGCATTTACAGGGTCGGCTATTTCTTTCAGCAAGGATTGTAGGAttttatgcaaatttatttgGACATAAAACCAAATTTTTCTTCCTTTGGGAAGATATTGACAACATTCAAGTGCTTCCTCCATCATTAGCATCATTAGGAAGCCCTACATTGGTCATAATTCTTCGAAGAGGAAGAGGCATCGATGCAAGGCATGGTGCCAAGTCACAAGATGAAGAAGGAAGGCTTAGATTTCATTTTCAGTCGTTTGTTTCTTTCGGTTCTGCATCCAGAACAATAATGGCCTTGTGGAGAACAAGAATACTGAACCCCTATCAGAAAGAACAAATTACGGAGGAGCATGAAGATCAAGAAGTCTTGGTAATGCCTGATGACTATGGATCTATCCTAGAGGATGAAGTAAAAATGTCCAGTATTTACTCTGCTGAACTGCCAATTAAGATGGGATTAGTGATGGAAATTTTTGAGGGAGGAAACTTAGAGCATAAGATTATGAAGAGAAGTGGTTGTATGGACTATGACACTACACCGTGGGATCCAGTAAAACCTGATGTCCTCGAAAGGCGTGTTTCTTATCAATTTAATCGACATTCGTCGGTATTTGATGTAACAAGCACACAACAAAAGTTTCCAAATACAATCACCGGAGGATGGATTGTGAATGAAGTTATGGTCCTTAATGGTGTCCCATTTTCTGATCACTTCCGtATTCATTTTAGGTACGAAATTGAGAAATCAGCACTTAGTGAATGTGCTTGCAAGTGTGATGTGTACATTGGCATTATGTGGCTTAGGAGCTCTAAGTTTCAGCAAAGGATCAACCGGAACATAACATCCAAGTTTAAAATTCGATTTGAGGAAATATTTGAACTGGTGCAGAAAGAGATTTTGTTGTTGTCTCATAACTCTCATGGGTAA 3075 0.3779 MLKKLYVCVLEAKDLPIKNSRVKLQLGKFKYKTRISRNTFNPTWNEEFVFKVKDIAEEVLVVTVVNDHSDDELKVINCDVVDFVGEVIIPIGSVGFDQDNNKQISPPTWFSLQCSNKSGRFFNKFCGKILLTISLHCKSRASSMNHRHSPNSTIAIENSATDLDDLHTSSQPSFRKVRKMGEGKQLLKVIANRLDRIFNKKVRNSKSADCSETSNSLSDYEDSVEENSPPCSFEEGIAVMESRDNQPESPENLPGGILVDKIYVVSPYNLNVVLFAPNSQFRKDLAELQGTTNLQEGAWSWKGEDMSCLTRVVTYTKAASKLVKAVIATEEQTYIRVTKGEFVVLVSVCTPDVPYGNTFRIELLYKIMPGEEVSSGDESSHLVISWGIVFLQSTMMKGMIESGARQGLKESFDQFSNLLAQSFKVLDKQELINKEQLLATLQTESQWNWWQAIAYFWNFTVVSTFFMVLYFLLHILRCGPSQPQGLEFRGIELPDSLGELVTSGILVIQLKRVYHMVAHFVQARFQMGTDHGMKAHGDGWVVTVALIEGVDLASLESTGFSDPYVVFTCNGQTRSSSVKLETSDPHWNEILEFDAMEEPPSVLHVEVFDFDGPFDQDVSLGHAEINFLKHTSTELADMWLMLEGKLAQSAQSKLHLRIFLDNNKGVETIKDYLEKKEKEVGKKLNLPSPQRNSTFQKLFGLPPEEFLINDFTCSLKRKLHLQGRLFLSARIVGFYANLFGHKTKFFFLWEDIDNIQVLPPSLASLGSPTLVIILRRGRGIDARHGAKSQDEEGRLRFHFQSFVSFGSASRTIMALWRTRILNPYQKEQITEEHEDQEVLVMPDDYGSILEDEVKMSSIYSAELPIKMGLVMEIFEGGNLEHKIMKRSGCMDYDTTPWDPVKPDVLERRVSYQFNRHSSVFDVTSTQQKFPNTITGGWIVNEVMVLNGVPFSDHFRIHFRYEIEKSALSECACKCDVYIGIMWLRSSKFQQRINRNITSKFKIRFEEIFELVQKEILLLSHNSHG 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02311 1024 CDD C2 5 112 - -
Tsu03g02311 1024 MobiDBLite consensus disorder prediction 208 231 - -
Tsu03g02311 1024 Pfam VAD1 Analog of StAR-related lipid transfer domain 858 997 IPR031968 -
Tsu03g02311 1024 Pfam VAD1 Analog of StAR-related lipid transfer domain 258 407 IPR031968 -
Tsu03g02311 1024 Gene3D C2 domain 2 163 IPR035892 -
Tsu03g02311 1024 PANTHER BNAA05G37250D PROTEIN 4 1020 IPR044511 -
Tsu03g02311 1024 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 140 IPR035892 -
Tsu03g02311 1024 Gene3D - 691 818 IPR011993 -
Tsu03g02311 1024 ProSiteProfiles C2 domain profile. 521 640 IPR000008 -
Tsu03g02311 1024 MobiDBLite consensus disorder prediction 208 225 - -
Tsu03g02311 1024 ProSiteProfiles VASt domain profile. 254 427 IPR031968 -
Tsu03g02311 1024 SMART gram2001c 693 759 IPR004182 -
Tsu03g02311 1024 Gene3D C2 domain 525 660 IPR035892 -
Tsu03g02311 1024 ProSiteProfiles C2 domain profile. 1 104 IPR000008 -
Tsu03g02311 1024 Pfam C2 domain 541 640 IPR000008 -
Tsu03g02311 1024 Pfam C2 domain 4 98 IPR000008 -
Tsu03g02311 1024 ProSiteProfiles VASt domain profile. 854 1015 IPR031968 -
Tsu03g02311 1024 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 540 665 IPR035892 -
Tsu03g02311 1024 Pfam GRAM domain 694 766 IPR004182 -
Tsu03g02311 1024 CDD C2 542 642 - -
Tsu03g02311 1024 PANTHER C2 AND GRAM DOMAIN-CONTAINING PROTEIN 4 1020 - -
Tsu03g02311 1024 SMART C2_3c 541 640 IPR000008 -
Tsu03g02311 1024 SMART C2_3c 4 103 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02311 Tsu-Chr3 26117144 26123212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02311 5 217 Lipid Metabolism Gene Families AT5G48060 24.107 3.65e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02311 - - gmx:100811103 1565.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02311 03 26117144 26123212 Tsu03g02311 03 26117144 26123212 ECH