Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02294 ATGGGAAGCGGTGAAATGGGAGTTGCAGAAAGCGGTGGCGCTTCACTACCATCCGTCGGCGCCGACGCAACAAAACGAAGAGTAACCTATTTCTACGAACCAACCATCGGCGATTATTACTACGGTCAAGGTCACCCAATGAAACCCCACAGAATTCGCATGGCTCACAATCTCATCATTCACTACGCACTTCACCGTCGTATGCAAATCAACCGTCCATTCCTCGCCGCACCTGAAGACATCCGTCGTTTTCACTCCGACGACTACGTCGACTTTCTTTCTTCCGTTTCACCTGAGATCCTTTCGGAGAATTCTCACTCTCACTATCGGCAGTTAAAGCGGTTCAATGTTGGTGAAGATTGTCCCGTTTTTGACGGACTTTTCCCTTTCTGTCAAGCATCTGCTGGTGGATCTATTGGTGCTGCTGTTAGGCTTAATCGTGGTGATGCTGATATTGCTATTAATTGGGCTGGTGGTTTGCATCATGCTAAGAAAGCTGAAGCTTCTGGATTTTGCTATGTTAATGACATTGTTCTTGGTATTCTTGAACTTCTCAAAGTTCATAGgCGTGTCCTGTATGTTGATATTGATGTCCACCATGGAGATGGTGTTGAGGAGGCATTTTACACTACTGATAGAGTGATGACGGTGTCTTTTCACAAGTTTGGCGATTTTTTCCCAGGAACTGGGCATATTAAAGACACTGGGGTTGGCCCTGGAAAGGATTATGCTCTAAATGTTCCTTTGAATGATGGAATGGATGATGAAAATTTCCGTGCTCTGTTCCGTCCCATTATGCAAAAAGTCATGGATGTTTATCAACCTGATGCAGTTGTTCTTCAATGTGGAGCTGATTCATTATCTGGTGACAGGTTGGGTTGCTTTAACTTGTCTGTGAAGGGTCATGCAGATTGCCTTCGTTTCCTGAGATCTTTCAATGTTCCTCTAATGGTCTTGGGCGGGGGAGGATACACAGTACGGAATGTTGCTCGATGTTGGTGTTATGAGaCAGCAGTGGCAGTAGGAGTGGAGCCTAGCAATAAGTTGCCATACAATGAGTATTATGAATATTTTGGCCCAGACTACACACTTCATGTCGAACCAAACAACATGGAGAACCTAAACACAGCCAAGGATATGGAAAAAATTAGGAACACTTTACTTGAACAAATTTCCAGACTTCCTCATGCACCCAGTGCTCCTTTTCAGACAACACCATCAACTACAGAAGTTCCGGAAGAGGAAGAAGAGGACATGGATACTAGGCCAAAACGTCGTATATGGAGTGGTGAAGATTATGATTCTGATcctgatgaagatgaagatgagaAGGCTGGTACAAAGAACTCAAATTTAACTGCCCATATGAGGCGCACAGCTGATGGGATGGAAGAAGATAAGCCAGAAGTTAAGCATGATGTGCATCCATCATGCTAA 1437 0.4377 MGSGEMGVAESGGASLPSVGADATKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIIHYALHRRMQINRPFLAAPEDIRRFHSDDYVDFLSSVSPEILSENSHSHYRQLKRFNVGEDCPVFDGLFPFCQASAGGSIGAAVRLNRGDADIAINWAGGLHHAKKAEASGFCYVNDIVLGILELLKVHRRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDTGVGPGKDYALNVPLNDGMDDENFRALFRPIMQKVMDVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTVRNVARCWCYETAVAVGVEPSNKLPYNEYYEYFGPDYTLHVEPNNMENLNTAKDMEKIRNTLLEQISRLPHAPSAPFQTTPSTTEVPEEEEEDMDTRPKRRIWSGEDYDSDPDEDEDEKAGTKNSNLTAHMRRTADGMEEDKPEVKHDVHPSC 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02294 478 Gene3D Histone deacetylase domain 17 406 IPR037138 -
Tsu03g02294 478 CDD HDAC_classI 31 340 - -
Tsu03g02294 478 PRINTS Histone deacetylase signature 47 64 IPR003084 GO:0004407|GO:0016575
Tsu03g02294 478 PRINTS Histone deacetylase signature 80 98 IPR003084 GO:0004407|GO:0016575
Tsu03g02294 478 PRINTS Histone deacetylase signature 136 156 IPR003084 GO:0004407|GO:0016575
Tsu03g02294 478 PRINTS Histone deacetylase signature 236 249 IPR003084 GO:0004407|GO:0016575
Tsu03g02294 478 PRINTS Histone deacetylase signature 253 271 IPR003084 GO:0004407|GO:0016575
Tsu03g02294 478 PRINTS Histone deacetylase signature 115 132 IPR003084 GO:0004407|GO:0016575
Tsu03g02294 478 PRINTS Histone deacetylase signature 177 193 IPR003084 GO:0004407|GO:0016575
Tsu03g02294 478 PIRSF HDAC_I_euk 12 475 IPR003084 GO:0004407|GO:0016575
Tsu03g02294 478 SUPERFAMILY Arginase/deacetylase 26 393 IPR023696 -
Tsu03g02294 478 PRINTS Histone deacetylase superfamily signature 190 205 IPR000286 -
Tsu03g02294 478 PRINTS Histone deacetylase superfamily signature 158 181 IPR000286 -
Tsu03g02294 478 PRINTS Histone deacetylase superfamily signature 275 285 IPR000286 -
Tsu03g02294 478 MobiDBLite consensus disorder prediction 418 432 - -
Tsu03g02294 478 Pfam Histone deacetylase domain 45 338 IPR023801 -
Tsu03g02294 478 PANTHER HISTONE DEACETYLASE 12 444 - -
Tsu03g02294 478 MobiDBLite consensus disorder prediction 458 478 - -
Tsu03g02294 478 PANTHER HISTONE DEACETYLASE 6 12 444 - -
Tsu03g02294 478 MobiDBLite consensus disorder prediction 394 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02294 Tsu-Chr3 25858416 25863394 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02294 K06067 - gmx:100801159 818.92