Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02293 atgttgacTCAGTTTCAATGGCTACATTCTGAACTCACCAACGTTTGCAAGTCCTTATTGCGAGTGAAGCAGTTACATGCTTGCCTTTTGAAGACTCATTTCTCACAAGACCCTTTTTATGCAACTCAAATTATTAGACTTTATGCATTTAACAATCACATTAACTATGCGTACCATGTGTTCGACAAAACTCCCATTCGAAGTGTTTACCTTTGGAATTCCATCATTCGAGCTTTTGCAAAGACTCGAAGATTTGGCAATGCAATCTCTCTATTTAAAAACATGCTTGAGGCTGACATAAGGCCTGATAATTACACTTACGCATGTGTTATACGTGCATGTTCTGATAACTTTGATTTTGGTATGCTAAGACTTGTTCATGGAAGTTATGTGTCTGCAGGATTGGGACAGGATCCTATTTGTTGTAGTGCACTTGTGAGTGCTTATTCAAAACTTGGCTTTGTTCATGAAGCGTGTAGAGTGTTCAATGGGATTGCTGAACCGGATTTAGTTTTGTGGAACTCTTTGATTTCTGCTTATGTGTGTTCTAGTATGTGGGATATAGGGTATCAAATGTTTAGCGCAATGAGACATTCTGGGAAGAAGCCTGATGGGTTTACATTGGCTGGGTTGCTTGTGGGTATTGCAGATTCTAGCCTGCTGAGCATTGGCCAAGGATTACATG 685 0.3942 MLTQFQWLHSELTNVCKSLLRVKQLHACLLKTHFSQDPFYATQIIRLYAFNNHINYAYHVFDKTPIRSVYLWNSIIRAFAKTRRFGNAISLFKNMLEADIRPDNYTYACVIRACSDNFDFGMLRLVHGSYVSAGLGQDPICCSALVSAYSKLGFVHEACRVFNGIAEPDLVLWNSLISAYVCSSMWDIGYQMFSAMRHSGKKPDGFTLAGLLVGIADSSLLSIGQGLH 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02293 228 Gene3D Tetratricopeptide repeat domain 4 121 IPR011990 GO:0005515
Tsu03g02293 228 Pfam PPR repeat 171 200 IPR002885 -
Tsu03g02293 228 Pfam PPR repeat 141 163 IPR002885 -
Tsu03g02293 228 PANTHER OS01G0545900 PROTEIN 5 228 - -
Tsu03g02293 228 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 5 228 - -
Tsu03g02293 228 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Tsu03g02293 228 Pfam PPR repeat family 68 114 IPR002885 -
Tsu03g02293 228 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Tsu03g02293 228 Gene3D Tetratricopeptide repeat domain 122 226 IPR011990 GO:0005515
Tsu03g02293 228 TIGRFAM PPR: pentatricopeptide repeat domain 171 204 IPR002885 -
Tsu03g02293 228 TIGRFAM PPR: pentatricopeptide repeat domain 140 163 IPR002885 -
Tsu03g02293 228 TIGRFAM PPR: pentatricopeptide repeat domain 70 103 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02293 Tsu-Chr3 25853963 25854647 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02293 23 228 Glycoside Hydrolase AT3G49170 27.014 8.99e-17 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02293 - - gmx:100820049 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02293 03 25853963 25854647 Tsu03g02293 03 25853963 25854647 ECH