Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02242 atgttgaGAATCGCAGCGTGCGCAAAGAGACTCGTTGGAACGGCGTCGTTTGAGACgcaatttcaaccaattagggTTCTTCCACGATTCTACCACGAGAGGGTGGTTGATCATTACGATAATCCCCGAAATGTTGGATCCTTCGATAAGAATGATCCTACGGTAGGAACTGGTCTTGTTGGAGCACCCGCTTGTGGCGATGTTATGAAGCTTCAGATTAAGATTGATGAGAAAACCGGAAAAATCACCGATGCTTGCTTTAAGACCTTTGGCTGTGGTTCCGCCATTGCTTCTTCCTCCGTTGCTACTGAATGGGTTAAGGGAAAGCAAATGGAGGAGGTTTTAACTATTAAGAACACTGAAATTGCAAAGCATCTTTCACTCCCACCAGTTAAGCTACACTGCAGCATGCTTGCTGAGGATGCTATAAAAGCTGCTGTTAAAGATTATGAACCTAAGCGAGCCTCCGCTACTGCAGGCACAGCAGCCACAGGAGAAAAATCTGCCACTGCATGA 516 0.4419 MLRIAACAKRLVGTASFETQFQPIRVLPRFYHERVVDHYDNPRNVGSFDKNDPTVGTGLVGAPACGDVMKLQIKIDEKTGKITDACFKTFGCGSAIASSSVATEWVKGKQMEEVLTIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEPKRASATAGTAATGEKSATA 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02242 171 CDD IscU_like 31 146 IPR002871 GO:0005506|GO:0016226|GO:0051536
Tsu03g02242 171 Pfam NifU-like N terminal domain 31 155 IPR002871 GO:0005506|GO:0016226|GO:0051536
Tsu03g02242 171 SUPERFAMILY SufE/NifU 30 154 - -
Tsu03g02242 171 TIGRFAM iscU: FeS cluster assembly scaffold IscU 31 154 IPR011339 GO:0005506|GO:0016226|GO:0051536
Tsu03g02242 171 Gene3D - 30 170 - -
Tsu03g02242 171 PANTHER IRON-SULFUR CLUSTER ASSEMBLY ENZYME NIFU HOMOLOG 24 167 IPR002871 GO:0005506|GO:0016226|GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02242 Tsu-Chr3 24865384 24868144 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02242 K22068 - gmx:100806169 276.559