Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02208 ATGTTGAACCAGTTACTGGTTAAACCAGCTCAACGAACCTTGAACACTTCCCATCTCTACCAACCAAAACCCCTATTCTGTCTTCAACTCACCACCGTAGCCGAATCTCCACCGCCTCCAGAAGACGCCGCCGTCGCAAAACTAATCCTCGAATCAGATCCAAAATCCCTCGCCCAAACCCTATCAAACCACAGTTTCCGATGGACTCCAAACCTTGTCAACAACGTTCTCAAACGCCTCTGGAATCACGGACCCAAAGCTCTGCAATTCTTCAAACACCTCGACCGCCACCCAACCTACATTCACTCCACTTCCGCCTTCGAACATGCCATCGACATCGCTGCCCGGTTGCGCGAATACAACACCGCTTGGGCCTTAGTGGGCCGTATGCGGTCTCTCCGTTGCGGCCCAACTCCCAAAACCTTCGCAATTCTAGCTGAAAGGTACGCAACCGGTGGAAAAGCTCACCGGGCTGTGAAAGTGTTTTTGTCTATGCATGAACACGGTTGCCACCAGGATTTGAATTCATTCAATACAATTCTTGATGTACTATGCAAAACAAAACGTGTTGAGATGGcttataatttgtttaaaacATTCAAAGGTAGGTTTAAATGTGATAGTGTTAGTTATAATATAATGGCGAATGGTTGGTGTTTGATTAAGCGAACGCCGATGGCGTTGCAGGTTTTGAAGGAGATGGTGGAGAGGGGAATTATGCCGACGATGGTTACTTATAATACTTTGCTTAAAGGGTATTTTAGGTGTGGTCAATTGAATGAAGCTTGGGAGTTTTTTTTGGAGATGAAGAAGAGGAAGTGTGAAATTGATGTTGTTACTTATACTACAATGGTTCATGGGTTTGGTGTTGCTGGTGAGGTTAAGAGATCGAAGAGGGTTTTCGATGCAATGGTGAAAGAGGGTTTGGTTCCTTCTGTTGCTACTTATAATGCTTTGATTCAGGTTTTGTGTAAGAAGGATAGTGTGCAGAATGCTTTGTTGGTTTTTGAAGAGATGGTGGGGAAAGGGTATGTGCCTAATTTGACTACTTACAATGTTGTTATAAGAGGTTTGTGTCATTCCGGTGAAATTGAGAAAGGTTTGGAGTTTATGAAGAGAATGGAGGAACATGGGTGTAAGCCAAGTGTTCAGACATACAATGTTTTGATACGTTATTATTGTGATGATGGGGAACTTGAAAAGGGTTTCGAGTTGTTTGAAAAGATGGGGAACGGGACTTGTTTGCCCAATTTGGACACctataatattttgattagtGCCATGTTTGTGAGGAAGAAATCGGAGGATTTAGTGGTGGCTGGGAAATTGTTGATTGAGATGGTTGGTAGAGGTTTCTTGCCGCGTAAGTTTACTTTTAATCGGGTGTTAAATGGACTTGTTCTAACGGGGAATCGAGAGTTTGCTAATGATATATTAAGAATGCAAAGCAGGTGTGGTCGAATTCTTCGTAATGTGAAATTATGA 1485 0.4256 MLNQLLVKPAQRTLNTSHLYQPKPLFCLQLTTVAESPPPPEDAAVAKLILESDPKSLAQTLSNHSFRWTPNLVNNVLKRLWNHGPKALQFFKHLDRHPTYIHSTSAFEHAIDIAARLREYNTAWALVGRMRSLRCGPTPKTFAILAERYATGGKAHRAVKVFLSMHEHGCHQDLNSFNTILDVLCKTKRVEMAYNLFKTFKGRFKCDSVSYNIMANGWCLIKRTPMALQVLKEMVERGIMPTMVTYNTLLKGYFRCGQLNEAWEFFLEMKKRKCEIDVVTYTTMVHGFGVAGEVKRSKRVFDAMVKEGLVPSVATYNALIQVLCKKDSVQNALLVFEEMVGKGYVPNLTTYNVVIRGLCHSGEIEKGLEFMKRMEEHGCKPSVQTYNVLIRYYCDDGELEKGFELFEKMGNGTCLPNLDTYNILISAMFVRKKSEDLVVAGKLLIEMVGRGFLPRKFTFNRVLNGLVLTGNREFANDILRMQSRCGRILRNVKL 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02208 494 Gene3D Tetratricopeptide repeat domain 44 201 IPR011990 GO:0005515
Tsu03g02208 494 Gene3D Tetratricopeptide repeat domain 373 447 IPR011990 GO:0005515
Tsu03g02208 494 Gene3D Tetratricopeptide repeat domain 303 372 IPR011990 GO:0005515
Tsu03g02208 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Tsu03g02208 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 382 416 IPR002885 -
Tsu03g02208 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 381 IPR002885 -
Tsu03g02208 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Tsu03g02208 494 Pfam PPR repeat family 173 219 IPR002885 -
Tsu03g02208 494 Pfam PPR repeat family 383 428 IPR002885 -
Tsu03g02208 494 Pfam PPR repeat family 241 288 IPR002885 -
Tsu03g02208 494 Pfam PPR repeat family 311 360 IPR002885 -
Tsu03g02208 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 207 241 IPR002885 -
Tsu03g02208 494 TIGRFAM PPR: pentatricopeptide repeat domain 244 278 IPR002885 -
Tsu03g02208 494 TIGRFAM PPR: pentatricopeptide repeat domain 385 417 IPR002885 -
Tsu03g02208 494 TIGRFAM PPR: pentatricopeptide repeat domain 279 313 IPR002885 -
Tsu03g02208 494 TIGRFAM PPR: pentatricopeptide repeat domain 209 242 IPR002885 -
Tsu03g02208 494 TIGRFAM PPR: pentatricopeptide repeat domain 350 383 IPR002885 -
Tsu03g02208 494 TIGRFAM PPR: pentatricopeptide repeat domain 176 199 IPR002885 -
Tsu03g02208 494 TIGRFAM PPR: pentatricopeptide repeat domain 315 347 IPR002885 -
Tsu03g02208 494 Gene3D Tetratricopeptide repeat domain 202 300 IPR011990 GO:0005515
Tsu03g02208 494 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 30 494 - -
Tsu03g02208 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 276 IPR002885 -
Tsu03g02208 494 PANTHER OS02G0679200 PROTEIN 30 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02208 Tsu-Chr3 24020230 24023002 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02208 140 475 Miscellaneous Gene Families AT4G11690 27.679 2.30e-34 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02208 - - adu:107473026 731.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02208 03 24020230 24023002 Tsu03g02208 03 24020230 24023002 ECH