Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02161 ATGGTTTCAACGAGACGTAACAGTGGTGGATCTTTCCCTtccaataacaataacaacaacaataactcTAAAAGACCTTCTTCATCTTCCGATGACAAACctccttcttctccttctcctaAACGCCAAAAGgCTGACAATGGTGCTGCTACTGAGAAACCGATTTCTCCGGCGGAGAATTCCAAGGATTTATCTACTCCTGACCCTCCCGCCGATCCCGGAGAATGTCGTAACGCCGATGCTCAGATCGATGAACCGGCAGTAGATGCTGATGATAAAACCGATGCAACTCCGCCGATCGCTGACGGTTCTTCGCCCACTCTGGTAGCTGATAAACCTAGGGCTTCGTTTTCTTCATGGAGTATTTATCAGAAGCAAAACCCGAACCTTGAGTCTTCAGCTCCATGGTGTCGGCTTTTGTCTCAGTCTGCACAGCATCCAAATGTTTCTATTTGTACACCGAACTTTACGATTGGCTCTAGCAGAAATTGCAACTTTCATTTGAAGGATCATACTATAAGTGGAAATTTATGCAAGATCAAACATACACAGCGCGAGGGACTTGATGCGGCTGTGCTAGAAAGTACGGGTAGCAAAGGATCTGTGCTAGTTAATGGGACACTTGTCAAGAAGAATAACTGCTGCGCGCTTAACTCGGGTGATGAGGTGGTTTTTGGCTTGCATGGAAATCATTCTTATATTTTTCAGCAAGTAAACACCGAGGTTGCAGTTAAGGGTGCAGAAGTTCAGAATGGTGTTGGTAAATTTATGCAGTTTGAAAGGAGAAGCGGAGACCCTTCAGCCGTGGCTGGGGCTTCTATATTGGCTTCTCTTTCTAATCTCAGGCAGGATCTTACAAGATGGAAGTCTCCATCTCAGACTGCCAGTAAACCTCACCAGGCTGCTGATGTTTCTATTCATACTGTTCTCCCTGATGGCACAGAAATTGAGCTTGATGGCCTGGAAGGAAACTCAACTCCAAATATAGGAACTGATAAAGCTGCTGATGCTGAGGCTAGCAACAAGAACTCTCCTATGGAATGCGATCCAGAGGATGCAGGCGCAGAGCCAGGCAATGTAAAATTCTCTGGGGTGAATGATTTGCTAAGGCCTTTCTTCAGGATTCTAGCTGGATCTACTACTTGTAAACTGAAATTGAGCAAAAGTATCTGTAAACAGGTATTGGAAGAAAGAAATGGGGCGGAGGACACACAAGCTGCATCGACTTCGGGTACATCTGTACGCTGTTCAGTTTTTAAAGAAGATGCCCATGCTGCAATACTGGATGAAAAAGAACTAGAAGTGTCCTTTGACAACTTCCCATACTATTTAAGTGAGAATACAAAAAATGTCCTGATTGCAGCTTGCTTTATACACCTGAAGCATAAAGAGCATGCAAAGTACACCACAGATCTTACCACCGTAAATCCTCGTATTCTACTTTCAGGACCTGCAGggtcAGAAATATACCAGGAGATGCTTGTAAAAGCACTTGCGAAATACTTTGGTGCTAAATTGCTCATATTTGATAGCCAGTCGCTTTTGGGTGGTTTATCTTCTAAGGAAGCTGAATTGCTCAAAGATGGATTTAATGCTGAGAAATCTTGCAGTCCTACAGCCACAGACACGGCTAAGAGCATCGATCCACCAGTTAGTGAAACAGATACACCTAGCTCTTCAAATGCACCTACTCCACTTGGCCTTGAATCTCAAGCTAAGTTGGAAACTGATAGTGTACCGTCAACGTCTGGGACAGCTAAAAATTGCTTGTTTAAACTGGGCGACCGGGTTAAGTATAGTTCATCTTCTGGTTGTTTGTATCAGACATCTTCTTCAAGGGGTCCATCTAATGGAAGTCGAGGGAAGGTTGTCTTAATTTTCGATGAAAATCCATTGTCAAAAATTGGTGTAAGATTTGATAAACCTATACCTGATGGGGTTGATCTTGGAGGTGCCTGTGAGGGGGGTCAAGGATTTTTCTGCAACGTCACTGATCTTCGATTGGAAAACAGTGGCATTGACGAACTTGACAAATTACTTATTAATACGTTGTTTGAGGTTGTAACTAGTGAGAGTAGAAATTCACCTTTCATTTTGTTCATGAAAGAAGCAGAAAAGTCTATAGTAGGAAATGGAGACCCGTATTCATTTAAAAGTAAGCTTGAAACGCTTCCCGACAATGTGGTGGTAATAGGTTCACACACTCACACCGACAGTCGAAAGGAGAAGTCACATCCTGGGGGTTTGCTTTTTACAAAGTTTGGCAGCAATCAGACTGCCCTCCTTGACTTGGCTTTCCCGGATAGTTTCGGAAGATTACATGATAGGGGAAAAGAAGTcccaaaaccaaacaaaacattGACCAAGTTATTTCCAAATAAAGTAACAATTCACATGCCACAGGACGAGGCACTTTTAGCATCATGGAAACAGCAACTTGACCGAGATGTGGAGACTCTTAAAGTCAAAGGAAATTTACACCATTTGCGCACCGTAAGTAACTTTGTgcaattttcaatttga 2523 0.4174 MVSTRRNSGGSFPSNNNNNNNNSKRPSSSSDDKPPSSPSPKRQKADNGAATEKPISPAENSKDLSTPDPPADPGECRNADAQIDEPAVDADDKTDATPPIADGSSPTLVADKPRASFSSWSIYQKQNPNLESSAPWCRLLSQSAQHPNVSICTPNFTIGSSRNCNFHLKDHTISGNLCKIKHTQREGLDAAVLESTGSKGSVLVNGTLVKKNNCCALNSGDEVVFGLHGNHSYIFQQVNTEVAVKGAEVQNGVGKFMQFERRSGDPSAVAGASILASLSNLRQDLTRWKSPSQTASKPHQAADVSIHTVLPDGTEIELDGLEGNSTPNIGTDKAADAEASNKNSPMECDPEDAGAEPGNVKFSGVNDLLRPFFRILAGSTTCKLKLSKSICKQVLEERNGAEDTQAASTSGTSVRCSVFKEDAHAAILDEKELEVSFDNFPYYLSENTKNVLIAACFIHLKHKEHAKYTTDLTTVNPRILLSGPAGSEIYQEMLVKALAKYFGAKLLIFDSQSLLGGLSSKEAELLKDGFNAEKSCSPTATDTAKSIDPPVSETDTPSSSNAPTPLGLESQAKLETDSVPSTSGTAKNCLFKLGDRVKYSSSSGCLYQTSSSRGPSNGSRGKVVLIFDENPLSKIGVRFDKPIPDGVDLGGACEGGQGFFCNVTDLRLENSGIDELDKLLINTLFEVVTSESRNSPFILFMKEAEKSIVGNGDPYSFKSKLETLPDNVVVIGSHTHTDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNKTLTKLFPNKVTIHMPQDEALLASWKQQLDRDVETLKVKGNLHHLRTVSNFVQFSI 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02161 840 Pfam FHA domain 157 226 IPR000253 GO:0005515
Tsu03g02161 840 SUPERFAMILY SMAD/FHA domain 116 236 IPR008984 GO:0005515
Tsu03g02161 840 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 90 368 - -
Tsu03g02161 840 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 393 832 - -
Tsu03g02161 840 Gene3D - 135 244 - -
Tsu03g02161 840 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 90 368 - -
Tsu03g02161 840 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 393 832 - -
Tsu03g02161 840 MobiDBLite consensus disorder prediction 318 357 - -
Tsu03g02161 840 MobiDBLite consensus disorder prediction 1 112 - -
Tsu03g02161 840 MobiDBLite consensus disorder prediction 78 96 - -
Tsu03g02161 840 MobiDBLite consensus disorder prediction 1 44 - -
Tsu03g02161 840 MobiDBLite consensus disorder prediction 535 567 - -
Tsu03g02161 840 Gene3D - 572 671 - -
Tsu03g02161 840 CDD FHA 136 236 IPR000253 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02161 Tsu-Chr3 23115455 23124393 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02161 - - gmx:100778164 1306.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02161 03 23115455 23124393 Tsu03g02161 03 23115455 23124393 ECH