Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02108 ATGAAGGAGCGGGCCTCGCCGCCATCAGCACCTCCACCACAAGATTCTAATTCTAAACCCCAATTGCCCGCAATTAACCCGGGCACCTACGTTGTCCGAGTTCCTAAGGACCAAATATATCGCGTTCCTCCGCCAGAAAATGCACATATTGTCGAGCAACATCATAGCGCTCCCCCAAAGAAGACAAATTGTACCCGTTGTTACTGTATCACGTTCATCATTATCTTCCTCGCCGTTGTCATATTGATTGGAGGTGTTTTAGGTGGTCTTTTCTTCATGACACAAGAAGATCCACtgttggtttttgtttttttcttggcACTTCAATCATTAGTTGGAAGAGCAAGAAACAAACAGTGGTCTCAAGGTGATCCTCAGAAGCAGAATACAGGGCTCTTGCTCAATCTACATGTGAAGGGCAATGACTGCTATATCTGCTCAGAGACTTTCAAATCCAACATGACACTCCCATAA 474 0.4325 MKERASPPSAPPPQDSNSKPQLPAINPGTYVVRVPKDQIYRVPPPENAHIVEQHHSAPPKKTNCTRCYCITFIIIFLAVVILIGGVLGGLFFMTQEDPLLVFVFFLALQSLVGRARNKQWSQGDPQKQNTGLLLNLHVKGNDCYICSETFKSNMTLP 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02108 157 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 10 94 - -
Tsu03g02108 157 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 10 94 - -
Tsu03g02108 157 MobiDBLite consensus disorder prediction 1 23 - -
Tsu03g02108 157 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02108 Tsu-Chr3 22224723 22226670 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02108 27 93 EF-hand Containing Proteins AT5G21130 44.776 4.82e-15 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02108 - - gmx:100790243 96.6709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02108 03 22224723 22226670 Tsu03g02108 03 22224723 22226670 ECH