Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02080 ATGGCTTCTTTTCGCATTGTATTTCGCCACATATTACACACCAACACCTATAACCGCTTCTTCTCTCCACCAACTCGCGCCACGTGGCGGCGGTGTCTTCTTTCTTCTCGTGTATTTTCAACTAATTACAATTACAGTGTTGTTGTAAAGAAAGACGAACGGTTAGGGAAACCAACTGAGAATGATAACTCCGATGTTGTAACCTCGACAACAATTGCAGCCATAGTAACATCGTTAGGTGGTCCTCCTGCTGCTGTTGGAATCGTTCGTCTTTCGGGTCCTCATGCGGTGTCTATTGCGGGTCGAGTATTTCGACCCGCTTTAAGAAACACGTGGCAGCCTACTAGTCATGTTGTTGAATACGGCGTCGTTTTGGATTCTGATGGAAATGTCATCGACGagGTTTTGGCAGTGCCTATGTTAGCACCGAGATCATATACTCGTGAAGATGTTGTTGAACTTCAATGTCATGGGAATGAAGTGTGTTTGCGTCGTGTGCTTAGGATTTGTTTGGAAGCTGGAGCAACACTTGCTCAGCCAGGAGAGTTTACTCTTCGTGCTTTTCTAAATGGTCGTTTGGATCTGTCCCAAGCTGAAAATGTTGCAAGACTGATCTCAGCTAAATCTATGGCTGCCGCTGATGCAGCACTTGAAGGAATTCAGGCATGTTTAGCTCAActatgttttcttctttttGGTGGTTTCTCTTCTCTTGTCAGATCATTGAGAAATCAGTGCATCGACATGCTCACTGAGATTGAAGCTCGTTTGGATTTCGAAGATGAGATGCCACCGCTAGATTTGAATGGGATTATGGATAAAATACAACATATGTCACAAGATGTTGAGAATGCATTGGAAACGGCAAATTATGACAAGCTTCTGCAATCTGGATTACAGTTAGCAATTGTTGGCCGTCCTAATGTCGGCAAGTCAAGCCTTCTTAATGCATGGAGCAAAAGTGAGAGAGCAATAGTTACTGAAATTGCTGGAACAACTCGAGATGTGATTGAAGCAAGTATTAACATCAACGGCATCCCCATAACCCTTCTTGATACTGCAGGCATCAGGGACACTGATGACATTGTGGAAAAAATTGATTGTGAGCCTAGTGCTGAGACTGAATGGGACAAAAGATGTCATCACAGTCACAAAATTTTCAGCAAGCAAGTTTTTACATGTGCTGTAACAAGTCAAGGAATACAAGACTTAGAGAGGGCTGTTTTAGAGATTGTGGGTATGGATGGCATTGCTGCTGGGGGTCGCAGATGGACCGTAAATCAGAGACAATGTGAACAACTTGTTCGGACCAAGGAAGCGCTTGTGAGGTTACAATCATCAATAAAGGAGGAACTACCTATGGATTTTTGGACAATTGATTTGAGGGATGCTGCATTGTCCCTTGGTCAGATAAATGGAGATGATATTTCGGAGGAAgttttatcaaatatatttagcAAGTTCTGTATTGGTAAATAA 1479 0.4212 MASFRIVFRHILHTNTYNRFFSPPTRATWRRCLLSSRVFSTNYNYSVVVKKDERLGKPTENDNSDVVTSTTIAAIVTSLGGPPAAVGIVRLSGPHAVSIAGRVFRPALRNTWQPTSHVVEYGVVLDSDGNVIDEVLAVPMLAPRSYTREDVVELQCHGNEVCLRRVLRICLEAGATLAQPGEFTLRAFLNGRLDLSQAENVARLISAKSMAAADAALEGIQACLAQLCFLLFGGFSSLVRSLRNQCIDMLTEIEARLDFEDEMPPLDLNGIMDKIQHMSQDVENALETANYDKLLQSGLQLAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASININGIPITLLDTAGIRDTDDIVEKIDCEPSAETEWDKRCHHSHKIFSKQVFTCAVTSQGIQDLERAVLEIVGMDGIAAGGRRWTVNQRQCEQLVRTKEALVRLQSSIKEELPMDFWTIDLRDAALSLGQINGDDISEEVLSNIFSKFCIGK 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02080 492 Gene3D tRNA modification GTPase MnmE domain 2 193 492 IPR027368 -
Tsu03g02080 492 TIGRFAM mnmE_trmE_thdF: tRNA modification GTPase TrmE 84 373 IPR004520 GO:0003924|GO:0005525|GO:0006400
Tsu03g02080 492 Gene3D Probable tRNA modification gtpase trme; domain 1 57 192 IPR027266 GO:0005515
Tsu03g02080 492 SUPERFAMILY Folate-binding domain 70 192 - -
Tsu03g02080 492 TIGRFAM small_GTP: small GTP-binding protein domain 300 364 IPR005225 GO:0005525
Tsu03g02080 492 PANTHER TRNA MODIFICATION GTPASE GTPBP3, MITOCHONDRIAL 69 371 - -
Tsu03g02080 492 Gene3D - 299 420 IPR027417 -
Tsu03g02080 492 SUPERFAMILY TrmE connector domain 193 492 - -
Tsu03g02080 492 Hamap tRNA modification GTPase MnmE [mnmE]. 70 492 IPR004520 GO:0003924|GO:0005525|GO:0006400
Tsu03g02080 492 CDD trmE 296 366 IPR031168 -
Tsu03g02080 492 PANTHER TRNA MODIFICATION GTPASE GTPBP3 69 371 - -
Tsu03g02080 492 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 298 411 IPR027417 -
Tsu03g02080 492 Pfam GTP-binding protein TrmE N-terminus 71 192 IPR018948 -
Tsu03g02080 492 PANTHER TRNA MODIFICATION GTPASE GTPBP3 364 492 - -
Tsu03g02080 492 PANTHER TRNA MODIFICATION GTPASE GTPBP3, MITOCHONDRIAL 364 492 - -
Tsu03g02080 492 Pfam MnmE helical domain 195 489 IPR025867 -
Tsu03g02080 492 Pfam 50S ribosome-binding GTPase 301 377 IPR006073 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02080 Tsu-Chr3 21958476 21962934 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02080 K03650 - vvi:100242149 619.002
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02080 03 21958476 21962934 Tsu03g02080 03 21958476 21962934 ECH