Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g02068 ATGGCAAGGAAGAAGGTATTTCCGAATATTGTCACTTTACCTCATTTTTACGTTTTCATAATTCCCAACATCGATTCTATTCTTCACCAATCCGTTTGTTTTTTCACCGCGCCTATTGTTAGATATcgagttttttttcttccggATATGGGTTCGTTTTTCAGTGTGGCAAATAATACCAATTCTGATCAAAGTGACCGAGAAGGAGTCTCTTCAAATGAGACATGTAAGAGGCAAAGAATGTCGCTTACCGTTGATGAAGAGAATCCAAGACTATTCCCTAATCTTCCTGATGAGGTATCAATTCAGATTATTGCTAGACTTCCTAGAATTTGTTACTTTAATTTTAGGCTTGTGTCAAGGAAATGGAAATCGACTATCATGAGTACGGAATTATATGAAGTAAGAAAAGAATTAGGAACAACGGAAGAGTGGTTATATCTGTTGGTTAAGGGAAGAGAAAATAAGCTTTTGTGGCATGCTGTAGATCCTCGTTCTCGAATATGGCAGAGATTGCCTACTATGCCTAATGTTGTCGATGAAGAAGAATCTAAGAAGAGTTCTTCAAGGCTTTGGATGTGGAACATGGTGGAAGGTATCAGAATTGCTGAAGTTATTAGAGGCTTTCTTGGAAAGAGGGATGCATTTGATGAAATGCCCTTTTGTGGTTGTGCTATTGGAGCTGTTGGTGGATGTCTCTATGTTCTAGGTGGATTCTCTAAAGCTTCAACTATGAGATGCGTCTGGCGGTTCAATCCTATACAAAATACGTGGAGTAAGGTGACTTCTATGTCTACAGGTCGGGCATACTGTAAGACAGGAATCTTAAACAACAAGCTATATGTTGTTGGAGGGGTTAGTCAAGGTCCAGCTGGATTGCTACCTCTTCAATCTGCTGAAGTTTTTGATCCCTCTACAGGTACATGGTCAGAAATGCCTAGTATGCCGTTCTCGAGAGCTCAGGTCCTGCCGAGCACTTTCTTGGCCGACATGTTAAAACCAATTGCGACAGGGTTAACGTCATACATGGGAAGGTTATGTGTTCCACAGAGTTTGTATTCATGGCCCTTTTTTGTTGATGTCGGGGGAGAAATCTATGATCCTGAGACAAACTCATGGCTAGAAATGCCAATTGGAATGGGCGAGGGTTGGCCTGCACGGCAAGCAGGTACAAAATTGAGTGTCGTAGTGGATAACGAATTATATGCTTTCGATCCTTCTAATACAATGGACAGCGGAAGGATCAAGGTATATGATCAAGGAGAAGATGCTTGGAAAGTTGTTATTGGAAAAGTCCCTATATATGGTTCCGATGATTCAGAATCTCCTTATTTACTTGCTGGTTTCCATGGAAAACTTCATGTCATCACAAAAGATGCCAATCATAATATTGCTGTACTGCGTGCGGAGCTACGCAATAATTTGGATTCTTCGCCATCATCACCCTCCTCAACTCTGTCACAAAATCCCTTGCCTGAATTTGTGGACCCGCCGGCCGAAACAGATGCAGTTATTTGGAAAATAGTTGCAAGTAGGTGTTTGGGACAGGCTGAACTAGTTAGTTGCCAAGTAATTGACATGTAG 1584 0.4085 MARKKVFPNIVTLPHFYVFIIPNIDSILHQSVCFFTAPIVRYRVFFLPDMGSFFSVANNTNSDQSDREGVSSNETCKRQRMSLTVDEENPRLFPNLPDEVSIQIIARLPRICYFNFRLVSRKWKSTIMSTELYEVRKELGTTEEWLYLLVKGRENKLLWHAVDPRSRIWQRLPTMPNVVDEEESKKSSSRLWMWNMVEGIRIAEVIRGFLGKRDAFDEMPFCGCAIGAVGGCLYVLGGFSKASTMRCVWRFNPIQNTWSKVTSMSTGRAYCKTGILNNKLYVVGGVSQGPAGLLPLQSAEVFDPSTGTWSEMPSMPFSRAQVLPSTFLADMLKPIATGLTSYMGRLCVPQSLYSWPFFVDVGGEIYDPETNSWLEMPIGMGEGWPARQAGTKLSVVVDNELYAFDPSNTMDSGRIKVYDQGEDAWKVVIGKVPIYGSDDSESPYLLAGFHGKLHVITKDANHNIAVLRAELRNNLDSSPSSPSSTLSQNPLPEFVDPPAETDAVIWKIVASRCLGQAELVSCQVIDM 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g02068 527 Pfam F-box domain 93 130 IPR001810 GO:0005515
Tsu03g02068 527 SUPERFAMILY Kelch motif 153 456 IPR015915 GO:0005515
Tsu03g02068 527 SMART fbox_2 96 136 IPR001810 GO:0005515
Tsu03g02068 527 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 53 526 - -
Tsu03g02068 527 Pfam Kelch motif 220 265 IPR006652 GO:0005515
Tsu03g02068 527 Pfam Kelch motif 268 316 IPR006652 GO:0005515
Tsu03g02068 527 SUPERFAMILY F-box domain 90 135 IPR036047 GO:0005515
Tsu03g02068 527 ProSiteProfiles F-box domain profile. 90 136 IPR001810 GO:0005515
Tsu03g02068 527 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 53 526 - -
Tsu03g02068 527 Gene3D - 149 433 IPR015915 GO:0005515
Tsu03g02068 527 SMART kelc_smart 232 278 IPR006652 GO:0005515
Tsu03g02068 527 SMART kelc_smart 279 329 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g02068 Tsu-Chr3 21764774 21768703 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g02068 86 314 Miscellaneous Gene Families AT4G33900 26.180 2.57e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g02068 - - gmx:100806691 811.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g02068 03 21764774 21768703 Tsu03g02068 03 21764774 21768703 ECH